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WormBase Tree Display for Gene: WBGene00001964

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Name Class

WBGene00001964EvidenceCGC_data_submission
SMapS_parentSequenceC17C3
IdentityVersion1
NameCGC_namehlh-25Person_evidenceWBPerson346
Sequence_nameC17C3.7
Molecular_nameC17C3.7
C17C3.7.1
CE42919
Other_nameCELE_C17C3.7Accession_evidenceNDBBX284602
Public_namehlh-25
DB_infoDatabaseAceViewgene2F825
WormQTLgeneWBGene00001964
WormFluxgeneWBGene00001964
NDBlocus_tagCELE_C17C3.7
PanthergeneCAEEL|WormBase=WBGene00001964|UniProtKB=Q18054
familyPTHR10985
NCBIgene182717
RefSeqproteinNM_062662.3
SwissProtUniProtAccQ18054
TREEFAMTREEFAM_IDTF322171
UniProt_GCRPUniProtAccQ18054
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhlh
Allele (12)
StrainWBStrain00036426
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00034674Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034927Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034928Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WBGene00040438Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WBGene00145392Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00084086Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00066683Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00081200Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00063416Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00063461Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00063415Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00063460Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00063413Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00063412Caenorhabditis remaneiFrom_analysisInparanoid_8
Sp34_30260200Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30260300Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30260400Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30260600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30260700Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40167100Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40167500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4531Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00003008Caenorhabditis elegansFrom_analysisPanther
WBGene00001968Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00001967Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00001966Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001965Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
Structured_descriptionConcise_descriptionhlh-25 encodes a REF-1-like protein with two bHLH domains that partially represses lag-2 transcription in ABa descendants (in response to a Notch signal, redundantly with HLH-27); lag-2 repression by HLH-25 may require UNC-37; HLH-25's paralogs include HLH-26 through HLH-29 and (more distantly) REF-1; hlh-25 is transcribed in the early MS lineage, has clustered binding sites for MED-1/2 in its promoter region, can be activated by ectopic MED-1, and loses activity in MED-1/2-deficient genetic backgrounds; HLH-25 is expressed in ABp granddaughters ~25 minutes after ABp first contacts an APX-1-expressing cell, and in ABa descendants after a second Notch interaction; HLH-25 is also expressed in four EMS granddaughters (MSaa, MSap, MSpa, MSpp) beginning at the 24-cell stage; ectopic HLH-25 can induce body muscle development in skn-1(RNAi);pal-1(RNAi) embryos that would otherwise lack muscle; HLH-25 is required for embryonic viability in mass RNAi assays.Paper_evidenceWBPaper00006395
WBPaper00025235
Curator_confirmedWBPerson567
Date_last_updated18 Apr 2008 00:00:00
Automated_descriptionPredicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including dauer exit; determination of adult lifespan; and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including MSpa; anal depressor muscle; body wall musculature; intestinal cell; and neurons.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC17C3.7
Corresponding_CDS_historyC17C3.7:wp193
Corresponding_transcriptC17C3.7.1
Associated_featureWBsf978550
Transcription_factorWBTranscriptionFactor000072
Experimental_infoRNAi_resultWBRNAi00010905Inferred_automaticallyRNAi_primary
WBRNAi00010899Inferred_automaticallyRNAi_primary
WBRNAi00084010Inferred_automaticallyRNAi_primary
WBRNAi00040773Inferred_automaticallyRNAi_primary
WBRNAi00024579Inferred_automaticallyRNAi_primary
WBRNAi00040785Inferred_automaticallyRNAi_primary
WBRNAi00027179Inferred_automaticallyRNAi_primary
Expr_patternExpr3495
Expr8067
Expr12501
Expr1144824
Expr2012500
Expr2030739
Drives_constructWBCnstr00005197
WBCnstr00011427
WBCnstr00021040
WBCnstr00021041
WBCnstr00036556
Construct_productWBCnstr00005197
WBCnstr00021041
WBCnstr00036556
Regulate_expr_clusterWBPaper00048624:hlh-25(ok1710)_downregulated
WBPaper00048624:hlh-25(ok1710)_upregulated
Microarray_results (15)
Expression_cluster (32)
InteractionWBInteraction000120591
WBInteraction000142635
WBInteraction000199304
WBInteraction000200603
WBInteraction000231250
WBInteraction000268712
WBInteraction000272297
WBInteraction000276189
WBInteraction000279459
WBInteraction000305041
WBInteraction000316670
WBInteraction000317511
WBInteraction000326252
WBInteraction000330335
WBInteraction000339894
WBInteraction000346685
WBInteraction000361494
WBInteraction000365526
WBInteraction000372915
WBInteraction000375919
WBInteraction000378342
WBInteraction000380606
WBInteraction000381194
WBInteraction000382060
WBInteraction000383789
WBInteraction000383985
WBInteraction000389038
WBInteraction000392958
WBInteraction000397339
WBInteraction000405119
WBInteraction000414268
WBInteraction000415950
WBInteraction000416625
WBInteraction000422598
WBInteraction000422694
WBInteraction000425700
WBInteraction000432028
WBInteraction000434886
WBInteraction000444227
WBInteraction000450767
WBInteraction000458457
WBInteraction000460047
WBInteraction000460508
WBInteraction000461361
WBInteraction000521980
WBInteraction000525760
WBInteraction000526289
WBInteraction000526318
WBInteraction000526537
WBInteraction000526693
WBInteraction000527268
WBInteraction000527421
WBInteraction000527546
WBInteraction000527605
WBInteraction000527707
WBInteraction000527968
WBInteraction000529589
WBInteraction000533194
WBInteraction000534870
Map_infoMapIIPosition-1.19086Error0.002255
PositivePositive_cloneC17C3Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00025235
WBPaper00026325
WBPaper00027287
WBPaper00027309
WBPaper00029033
WBPaper00034761
WBPaper00043858
WBPaper00048624
WBPaper00061738
WBPaper00062117
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene