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WormBase Tree Display for Gene: WBGene00004981

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Name Class

WBGene00004981EvidencePaper_evidenceWBPaper00005941
SMapS_parentSequenceY66H1B
IdentityVersion1
NameCGC_namespl-1
Sequence_nameY66H1B.4
Molecular_nameY66H1B.4
Y66H1B.4.1
CE20348
Other_namesplAccession_evidenceEMBLAF144639
CELE_Y66H1B.4Accession_evidenceNDBBX284604
Public_namespl-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspl
Allele (48)
RNASeq_FPKM (74)
GO_annotation (15)
Contained_in_operonCEOP4016
Ortholog (38)
ParalogWBGene00006418Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00007593Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022427Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00000239Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00001839Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006409Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006562Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006762Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015467Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionspl-1 encodes a sphingosine-1-phosphate lyase; spl-1 expression is regulated by the GATA-type transcription factor ELT-2.Paper_evidenceWBPaper00024977
Curator_confirmedWBPerson1843
Date_last_updated24 Jul 2012 00:00:00
Automated_descriptionPredicted to enable sphinganine-1-phosphate aldolase activity. Predicted to be involved in sphingolipid catabolic process. Predicted to be located in endoplasmic reticulum. Expressed in head and intestine. Human ortholog(s) of this gene implicated in nephrotic syndrome type 14. Is an ortholog of human SGPL1 (sphingosine-1-phosphate lyase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0080265Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10817)
Molecular_infoCorresponding_CDSY66H1B.4
Corresponding_transcriptY66H1B.4.1
Other_sequence (33)
Associated_featureWBsf047549
WBsf047550
WBsf047551
WBsf995135
WBsf995136
WBsf995137
WBsf1016544
WBsf229678
WBsf229679
WBsf229680
Experimental_infoRNAi_result (15)
Expr_patternExpr2571
Expr1019679
Expr1032479
Expr1161390
Expr2016061
Expr2034297
Drives_constructWBCnstr00010858
WBCnstr00018877
WBCnstr00020144
WBCnstr00022739
WBCnstr00022740
Microarray_results (19)
Expression_cluster (131)
InteractionWBInteraction000007864
WBInteraction000034493
WBInteraction000034494
WBInteraction000112943
WBInteraction000123387
WBInteraction000134712
WBInteraction000134947
WBInteraction000136089
WBInteraction000162041
WBInteraction000175722
WBInteraction000191373
WBInteraction000199288
WBInteraction000204963
WBInteraction000205162
WBInteraction000206605
WBInteraction000207784
WBInteraction000208589
WBInteraction000222252
WBInteraction000222328
WBInteraction000224439
WBInteraction000230352
WBInteraction000233770
WBInteraction000234640
WBInteraction000236713
WBInteraction000237663
WBInteraction000241082
WBInteraction000241734
WBInteraction000244242
WBInteraction000249702
WBInteraction000250473
WBInteraction000258717
WBInteraction000263914
WBInteraction000271517
WBInteraction000275570
WBInteraction000284438
WBInteraction000288080
WBInteraction000288742
WBInteraction000294341
WBInteraction000302797
WBInteraction000303558
WBInteraction000305768
WBInteraction000307110
WBInteraction000308172
WBInteraction000316801
WBInteraction000320820
WBInteraction000322251
WBInteraction000322364
WBInteraction000323369
WBInteraction000325527
WBInteraction000325903
WBInteraction000335838
WBInteraction000338004
WBInteraction000339898
WBInteraction000342089
WBInteraction000343144
WBInteraction000344117
WBInteraction000344217
WBInteraction000345067
WBInteraction000350009
WBInteraction000361847
WBInteraction000363851
WBInteraction000366047
WBInteraction000366081
WBInteraction000373282
WBInteraction000375853
WBInteraction000376888
WBInteraction000378474
WBInteraction000380010
WBInteraction000380065
WBInteraction000386159
WBInteraction000393641
WBInteraction000398869
WBInteraction000401231
WBInteraction000406868
WBInteraction000409395
WBInteraction000410425
WBInteraction000410502
WBInteraction000410872
WBInteraction000411145
WBInteraction000411320
WBInteraction000415897
WBInteraction000419365
WBInteraction000422303
WBInteraction000423313
WBInteraction000425088
WBInteraction000426493
WBInteraction000439231
WBInteraction000445553
WBInteraction000447739
WBInteraction000453269
WBInteraction000454625
WBInteraction000457142
WBInteraction000457339
WBInteraction000463778
WBInteraction000544321
WBInteraction000563238
WBInteraction000564289
WBInteraction000573585
WBInteraction000579634
WBInteraction000580414
WBInteraction000585009
WBInteraction000585915
Map_infoMapIVPosition-26.3038Error0.020777
PositivePositive_cloneY66H1BInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4370
4691
5537
Pseudo_map_position
Reference (12)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene