WormBase Tree Display for Gene: WBGene00000088
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WBGene00000088 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F32A7 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | aex | ||||||
Allele (170) | |||||||
Legacy_information | [Jim Thomas] Defecation defective, moderate to severe constipation, expulsion muscle contraction (Exp) missing in about 9 of 10 defecation cycles, anterior body contraction (aBoc) usually missing as well, adult males unaffected and mate well. | ||||||
See also sa23, sa41, sa42, sa43 | |||||||
[C.elegansII] sa23 : defecation defective, moderate to severe constipation, expulsion muscle contraction (Exp) missing in about 9 of 10 defecation cycles, anterior body contraction (aBoc) usually missing as well, adult males unaffected and mate well. OA3: sa41, sa42, sa43 (all similar) [Thomas 1990; JT] | |||||||
Strain | WBStrain00022773 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (29) | |||||||
Ortholog (47) | |||||||
Paralog | WBGene00001172 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000254 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00002232 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00017686 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | an ortholog of calcium-dependent serine endoproteinases, the kex2/subtilisin-like proprotein convertase that affects defecation cycle and anterior body contractions; and is expressed in all muscle cells except pharyngeal muscles. | Paper_evidence | WBPaper00004142 | |||
Curator_confirmed | WBPerson480 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables serine-type endopeptidase activity. Involved in several processes, including neuropeptide processing; positive regulation of synaptic assembly at neuromuscular junction; and positive regulation of transport. Located in extracellular space. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F32A7.6 | |||||
Corresponding_CDS_history | F32A7.6:wp56 | ||||||
Corresponding_transcript | F32A7.6.1 | ||||||
Other_sequence | Oden_isotig22904 | ||||||
Acan_isotig14016 | |||||||
Tcir_isotig22927 | |||||||
CJC17003_1 | |||||||
Associated_feature | WBsf649782 | ||||||
WBsf220659 | |||||||
WBsf220660 | |||||||
Experimental_info | RNAi_result (36) | ||||||
Expr_pattern | Expr1010377 | ||||||
Expr1149978 | |||||||
Expr2009250 | |||||||
Expr2027487 | |||||||
Drives_construct | WBCnstr00037741 | ||||||
Construct_product | WBCnstr00005315 | ||||||
WBCnstr00007723 | |||||||
WBCnstr00037741 | |||||||
Microarray_results | SMD_F32A7.6 | ||||||
SMD_F32A7.7 | |||||||
193818_s_at | |||||||
A_12_P119202 | |||||||
Aff_F32A7.6 | |||||||
GPL13394_WBGene00000088 | |||||||
GPL13914_F32A7.6 | |||||||
GPL14144_F32A7.6_1272-1331_0.927_7_C | |||||||
GPL14144_F32A7.6_1354-1413_0.948_1_A | |||||||
GPL14144_F32A7.6_1547-1606_0.946_2_B | |||||||
GPL19516_CGZ0019242 | |||||||
GPL21109_F32A7.6 | |||||||
GPL3518_CE28554 | |||||||
GPL8304_CE_WBGene00000088_A | |||||||
GPL8673_F32A7_6P00565 | |||||||
GPL8673_F32A7_6P00683 | |||||||
GPL8673_F32A7_6P01432 | |||||||
GPL9450_F32A7.6 | |||||||
cea2.p.09170 | |||||||
Expression_cluster (145) | |||||||
Interaction | WBInteraction000001570 | ||||||
WBInteraction000028975 | |||||||
WBInteraction000165455 | |||||||
WBInteraction000519683 | |||||||
WBInteraction000524187 | |||||||
WBInteraction000557476 | |||||||
WBInteraction000557477 | |||||||
WBInteraction000557478 | |||||||
WBProcess | WBbiopr:00000010 | ||||||
Map_info | Map | I | Position | 27.9582 | Error | 0.002256 | |
Well_ordered | |||||||
Positive | Positive_clone | F32A7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 1479 | |||||
1697 | |||||||
Pos_neg_data | 4754 | ||||||
4755 | |||||||
4756 | |||||||
4757 | |||||||
4758 | |||||||
4759 | |||||||
4760 | |||||||
Reference (34) | |||||||
Remark | Sequence connection from [Thacker C] | ||||||
old_name kpc-5 becomes new_name aex-5 from [Thacker C]. | |||||||
Method | Gene |