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WormBase Tree Display for Gene: WBGene00139028

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Name Class

WBGene00139028SMapS_parentSequenceCbre_Contig36
IdentityVersion2
NameCGC_nameCbn-vrk-1.2From_analysisInferred_from_orthology
Sequence_nameCBN00303
Molecular_nameCBN00303
CBN00303.1
CN09552
Public_nameCbn-vrk-1.2
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:50WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-vrk-1.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvrk
RNASeq_FPKMWBls:0000002 (11)
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
44.4029From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
88.8058From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
3.49582From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
4.25214From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
4.34701From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
5.35812From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
5.68064From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003810.3981From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
10.6727From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
10.9473From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (17)
WBls:000010114.055From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
9.43257From_analysisRNASeq.brenneri.total_over_all_stages.control_median
GO_annotation00202372
00202373
00202374
OrthologWBGene00017895Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00025576Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00053984Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00090732Pristionchus pacificusFrom_analysisOMA
CBOVI.g7207Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5325Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g19394Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12344Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14871Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12988Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9294Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13273Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g7577Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7657Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g9741Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00018.g1151Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00374.g9947Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vrk-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g16401Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00105.g4441Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04439Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006153Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04745Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5017Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20119820Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00123444Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00223925Brugia malayiFrom_analysisWormBase-Compara
chrII_pilon.g4648Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247731Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00202617Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257140Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00262594Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288230Trichuris murisFrom_analysisWormBase-Compara
Paralog (129)
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and protein kinase activity. Is an ortholog of C. elegans vrk-1. In C. elegans, vrk-1 is involved in several processes, including cell fate specification; gonad development; and regulation of fibroblast growth factor receptor signaling pathway.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN00303
Corresponding_transcriptCBN00303.1
Other_sequenceCBC14217_1
CR02199
CRC06286_1
AYC02623_1
AE04372
Experimental_infoMicroarray_resultsGPL14142_CBN00303_349-408_0.760_86_C
GPL14142_CBN00303_617-676_0.863_16_B
GPL14142_CBN00303_1582-1641_0.822_39_A
MethodGene