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WormBase Tree Display for Gene: WBGene00281849

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Name Class

WBGene00281849SMapS_parentSequencePPA_ChrV
IdentityVersion6
NameCGC_namePpa-syx-7From_analysisInferred_from_orthology
Sequence_namePPA43480
Molecular_namePPA43480
PPA43480.1
PP60253
Public_namePpa-syx-7
SpeciesPristionchus pacificus
HistoryVersion_change124 Nov 2017 16:14:22WBPerson4055EventCreated
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_namePpa-syx-7
308 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:24WBPerson1983Name_changeCGC_namePpa-syx-7
528 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:28WBPerson1983Name_changeCGC_namePpa-syx-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsyx
RNASeq_FPKMWBls:00000324.55264From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.31009From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
4.55264From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
5.37763From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00286460
00286461
OrthologWBGene00159566Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00162862Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00033368Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224133Brugia malayiFrom_analysisWormBase-Compara
WBGene00009478Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00132467Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00248685Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g9658Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g577Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20150Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14404Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1139Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g831Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g15275Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24202Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00152.g5694Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-syx-7Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold459.g1446Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00218.g7303Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_002474Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_002477Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11734Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8830Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10117810Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00059954Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00086109Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00261288Strongyloides rattiFrom_analysisWormBase-Compara
chrI_pilon.g1723Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00286015Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00090764Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105441Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274995Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278566Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00304493Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans syx-7.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA43480
Corresponding_transcriptPPA43480.1
Other_sequencePP02040
CBC01451_1
CJC09080_1
PPC02145_1
Experimental_infoMicroarray_resultsGPL14372_Probes_57353
Remark[190208 pad] The CGC name Ppa-syx-7 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-syx-7 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene