WormBase Tree Display for Gene: WBGene00000088
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WBGene00000088 | Evidence | CGC_data_submission | ||||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F32A7 | |||
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | aex | |||||
Allele (170) | ||||||
Legacy_information | [Jim Thomas] Defecation defective, moderate to severe constipation, expulsion muscle contraction (Exp) missing in about 9 of 10 defecation cycles, anterior body contraction (aBoc) usually missing as well, adult males unaffected and mate well. | |||||
See also sa23, sa41, sa42, sa43 | ||||||
[C.elegansII] sa23 : defecation defective, moderate to severe constipation, expulsion muscle contraction (Exp) missing in about 9 of 10 defecation cycles, anterior body contraction (aBoc) usually missing as well, adult males unaffected and mate well. OA3: sa41, sa42, sa43 (all similar) [Thomas 1990; JT] | ||||||
Strain | WBStrain00022773 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation (29) | ||||||
Ortholog (47) | ||||||
Paralog | WBGene00001172 | Caenorhabditis elegans | From_analysis | TreeFam | ||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00000254 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | ||||||
WBGene00002232 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00017686 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Concise_description | an ortholog of calcium-dependent serine endoproteinases, the kex2/subtilisin-like proprotein convertase that affects defecation cycle and anterior body contractions; and is expressed in all muscle cells except pharyngeal muscles. | Paper_evidence | WBPaper00004142 | ||
Curator_confirmed | WBPerson480 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | |||||
Automated_description | Enables serine-type endopeptidase activity. Involved in several processes, including neuropeptide processing; positive regulation of synaptic assembly at neuromuscular junction; and positive regulation of transport. Located in extracellular space. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F32A7.6 | ||||
Corresponding_CDS_history | F32A7.6:wp56 | |||||
Corresponding_transcript | F32A7.6.1 | |||||
Other_sequence | Oden_isotig22904 | |||||
Acan_isotig14016 | ||||||
Tcir_isotig22927 | ||||||
CJC17003_1 | ||||||
Associated_feature | WBsf649782 | |||||
WBsf220659 | ||||||
WBsf220660 | ||||||
Experimental_info | RNAi_result (36) | |||||
Expr_pattern | Expr1010377 | |||||
Expr1149978 | ||||||
Expr2009250 | ||||||
Expr2027487 | ||||||
Drives_construct | WBCnstr00037741 | |||||
Construct_product | WBCnstr00005315 | |||||
WBCnstr00007723 | ||||||
WBCnstr00037741 | ||||||
Microarray_results (19) | ||||||
Expression_cluster (145) | ||||||
Interaction | WBInteraction000001570 | |||||
WBInteraction000028975 | ||||||
WBInteraction000165455 | ||||||
WBInteraction000519683 | ||||||
WBInteraction000524187 | ||||||
WBInteraction000557476 | ||||||
WBInteraction000557477 | ||||||
WBInteraction000557478 | ||||||
WBProcess | WBbiopr:00000010 | |||||
Map_info (4) | ||||||
Reference (34) | ||||||
Remark | Sequence connection from [Thacker C] | |||||
old_name kpc-5 becomes new_name aex-5 from [Thacker C]. | ||||||
Method | Gene |