WormBase Tree Display for Gene: WBGene00000444
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| WBGene00000444 | SMap | S_parent | Sequence | T26C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ceh-21 | Person_evidence | WBPerson83 | |||||
| Sequence_name | T26C11.6 | ||||||||
| Molecular_name | T26C11.6 | ||||||||
| T26C11.6.1 | |||||||||
| CE29823 | |||||||||
| Other_name | CELE_T26C11.6 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ceh-21 | ||||||||
| DB_info | Database | AceView | gene | XC468 | |||||
| WormQTL | gene | WBGene00000444 | |||||||
| WormFlux | gene | WBGene00000444 | |||||||
| NDB | locus_tag | CELE_T26C11.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000444|UniProtKB=Q22811 | |||||||
| family | PTHR14057 | ||||||||
| NCBI | gene | 180504 | |||||||
| RefSeq | protein | NM_001392732.1 | |||||||
| SwissProt | UniProtAcc | Q22811 | |||||||
| TREEFAM | TREEFAM_ID | TF318206 | |||||||
| UniProt_GCRP | UniProtAcc | Q22811 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (101) | |||||||||
| Legacy_information | [Burglin T] NMK. Encodes cut class homeoprotein. [Burglin and Ruvkun 1992;]. ONECUT class homeobox gene Ruvkun 01/98. | ||||||||
| [C.elegansII] NMK. Encodes cut class homeoprotein (T26C11,6). [Burglin and Ruvkun 1992; TB] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00076509 | ||||||||
| 00076510 | |||||||||
| 00076511 | |||||||||
| 00076512 | |||||||||
| 00076513 | |||||||||
| 00076514 | |||||||||
| 00076515 | |||||||||
| 00076516 | |||||||||
| 00076517 | |||||||||
| 00107412 | |||||||||
| Contained_in_operon | CEOPX024 | ||||||||
| Ortholog (20) | |||||||||
| Paralog | WBGene00000464 | ||||||||
| WBGene00000460 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000459 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017538 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ceh-21 encodes a a ONECUT class CUT homeobox protein with a single N-terminal cut domain and an OCAM domain; the cut domain may be a compact DNA-binding domain composed of alpha helices; the OCAM domain is a nematode-specific motif conserved between CEH-21, CEH-41, and T02B5.2; ceh-21 is one of three nematode-specific ONECUT genes in a cluster with ceh-39 and ceh-41; CEH-21 may be required for muscle formation and differentiation, and is expressed in muscle precursor cells and differentiated gut cells; ceh-21 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00003249 | |||||
| WBPaper00005164 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00011755 | |||||||||
| WBPaper00022408 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson13481 | ||||||||
| WBPerson1843 | |||||||||
| WBPerson480 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed widely. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T26C11.6 | |||||||
| Corresponding_transcript | T26C11.6.1 | ||||||||
| Associated_feature | WBsf670127 | ||||||||
| WBsf978280 | |||||||||
| WBsf237032 | |||||||||
| WBsf237033 | |||||||||
| Transcription_factor | WBTranscriptionFactor000260 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00019250 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019249 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092894 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054185 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7684 | ||||||||
| Expr10229 | |||||||||
| Expr10230 | |||||||||
| Expr15571 | |||||||||
| Expr1019569 | |||||||||
| Expr1030252 | |||||||||
| Expr1157727 | |||||||||
| Expr1200003 | |||||||||
| Expr2009868 | |||||||||
| Expr2028108 | |||||||||
| Drives_construct | WBCnstr00012829 | ||||||||
| WBCnstr00015194 | |||||||||
| WBCnstr00015195 | |||||||||
| WBCnstr00016514 | |||||||||
| WBCnstr00037533 | |||||||||
| Construct_product | WBCnstr00037533 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (160) | |||||||||
| Interaction (35) | |||||||||
| Map_info | Map | X | Position | -17.4835 | Error | 0.002838 | |||
| Positive | Positive_clone | BBBC5 | |||||||
| T26C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
