WormBase Tree Display for Gene: WBGene00000477
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| WBGene00000477 | Evidence | Person_evidence | WBPerson583 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson36 | |||||||||
| SMap | S_parent | Sequence | C18C4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cft-1 | Person_evidence | WBPerson36 | |||||
| Sequence_name | C18C4.2 | ||||||||
| Molecular_name | C18C4.2 | ||||||||
| C18C4.2.1 | |||||||||
| CE25783 | |||||||||
| Other_name | C18C4.e | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C18C4.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | cft-1 | ||||||||
| DB_info | Database | AceView | gene | 5G25 | |||||
| WormQTL | gene | WBGene00000477 | |||||||
| WormFlux | gene | WBGene00000477 | |||||||
| NDB | locus_tag | CELE_C18C4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000477|UniProtKB=Q95QV2 | |||||||
| family | PTHR24223 | ||||||||
| NCBI | gene | 178939 | |||||||
| RefSeq | protein | NM_072062.5 | |||||||
| TrEMBL | UniProtAcc | Q95QV2 | |||||||
| UniProt_GCRP | UniProtAcc | Q95QV2 | |||||||
| OMIM | gene | 602421 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cft | ||||||||
| Allele (107) | |||||||||
| Strain | WBStrain00001401 | ||||||||
| WBStrain00031853 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00088636 | ||||||||
| 00088637 | |||||||||
| 00088638 | |||||||||
| 00088639 | |||||||||
| 00088640 | |||||||||
| 00107457 | |||||||||
| 00107458 | |||||||||
| 00107459 | |||||||||
| 00107460 | |||||||||
| 00107461 | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00003407 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003411 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003408 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003412 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003409 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003414 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003410 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003413 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Expressed in excretory canal. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; alcoholic pancreatitis; bronchial disease (multiple); and lung disease (multiple). Is an ortholog of human CFTR (CF transmembrane conductance regulator). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (21) | ||||||||
| Molecular_info | Corresponding_CDS | C18C4.2 | |||||||
| Corresponding_transcript | C18C4.2.1 | ||||||||
| Associated_feature | WBsf1000025 | ||||||||
| WBsf1019654 | |||||||||
| WBsf231770 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00010989 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040913 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033380 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4629 | ||||||||
| Expr5302 | |||||||||
| Expr1014719 | |||||||||
| Expr1030279 | |||||||||
| Expr1144958 | |||||||||
| Expr2009940 | |||||||||
| Expr2028180 | |||||||||
| Drives_construct | WBCnstr00002291 | ||||||||
| WBCnstr00012133 | |||||||||
| WBCnstr00037508 | |||||||||
| Construct_product | WBCnstr00037508 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | V | Position | -1.58281 | Error | 0.023136 | |||
| Positive | Positive_clone | C18C4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4944 | |||||||
| 4462 | |||||||||
| 4717 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027644 | ||||||||
| WBPaper00028961 | |||||||||
| WBPaper00031484 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
