WormBase Tree Display for Gene: WBGene00000509
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| WBGene00000509 | Evidence | Paper_evidence | WBPaper00005916 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C28D4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cka-1 | |||||||
| Sequence_name | C28D4.2 | ||||||||
| Molecular_name | C28D4.2a | ||||||||
| C28D4.2a.1 | |||||||||
| CE20533 | |||||||||
| C28D4.2b | |||||||||
| CE08431 | |||||||||
| C28D4.2c | |||||||||
| CE49764 | |||||||||
| C28D4.2b.1 | |||||||||
| C28D4.2c.1 | |||||||||
| Other_name | CELE_C28D4.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cka-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cka | ||||||||
| Allele (53) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000515 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000510 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000512 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000513 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000511 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000514 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cka-1 encodes an isoform of choline kinase whose activity has beenverified in vitro, and that has a strong preference for choline overethanolamine; CKA-1 and CKA-2 comprise a related group ('A') of cholinekinases. | Paper_evidence | WBPaper00005916 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Aug 2006 00:00:00 | ||||||||
| Automated_description | Enables choline kinase activity. Involved in CDP-choline pathway. Located in cell cortex. Human ortholog(s) of this gene implicated in several diseases, including colon adenoma; megaconial type congenital muscular dystrophy; narcolepsy; and recurrent hypersomnia. Is an ortholog of human CHKA (choline kinase alpha) and CHKB (choline kinase beta). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:8619 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||
| DOID:8986 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||||
| DOID:0050912 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1937) | ||||||
| DOID:9884 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||||
| DOID:0110632 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||||
| DOID:1059 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||||
| Molecular_info | Corresponding_CDS | C28D4.2a | |||||||
| C28D4.2b | |||||||||
| C28D4.2c | |||||||||
| Corresponding_transcript | C28D4.2a.1 | ||||||||
| C28D4.2b.1 | |||||||||
| C28D4.2c.1 | |||||||||
| Other_sequence (59) | |||||||||
| Associated_feature | WBsf652081 | ||||||||
| WBsf668182 | |||||||||
| WBsf668183 | |||||||||
| WBsf668184 | |||||||||
| WBsf668185 | |||||||||
| WBsf997468 | |||||||||
| WBsf1017993 | |||||||||
| WBsf230606 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00083992 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00102564 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041408 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084001 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084002 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029298 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011298 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024344 | ||||||||
| Expr1030302 | |||||||||
| Expr1145439 | |||||||||
| Expr2010024 | |||||||||
| Expr2028265 | |||||||||
| Drives_construct | WBCnstr00013306 | ||||||||
| WBCnstr00037489 | |||||||||
| Construct_product | WBCnstr00013306 | ||||||||
| WBCnstr00037489 | |||||||||
| Antibody | WBAntibody00000358 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | IV | Position | 4.39455 | Error | 0.001437 | |||
| Positive | Positive_clone | C28D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5022 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005493 | ||||||||
| WBPaper00005916 | |||||||||
| WBPaper00034497 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040386 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064661 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
