WormBase Tree Display for Gene: WBGene00000510
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WBGene00000510 | Evidence | Paper_evidence | WBPaper00005916 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C52B9 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cka | ||||||
Allele (84) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (21) | |||||||
Ortholog (41) | |||||||
Paralog | WBGene00000509 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000515 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00000512 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000513 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000511 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000514 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | cka-2 encodes an isoform of choline kinase whose activity has beenverified in vitro; CKA-1 and CKA-2 comprise a related group ('A') ofcholine kinases; purified CKA-2 is dimeric, requires 1 mM Mg(2+) foroptimal activity, and has a strong preference for choline overethanolamine; CKA-2 has a pH optimum of 10 and a k(cat) of 74/s, close tothe maximum rate observed for yeast and rat enzymes. | Paper_evidence | WBPaper00005916 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 11 Aug 2006 00:00:00 | ||||||
Automated_description | Enables choline kinase activity. Involved in CDP-choline pathway. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in several diseases, including colon adenoma; megaconial type congenital muscular dystrophy; narcolepsy; and recurrent hypersomnia. Is an ortholog of human CHKA (choline kinase alpha). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:8619 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||
DOID:8986 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||
DOID:0050912 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1937) | ||||
DOID:9884 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||
DOID:0110632 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||
DOID:1059 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||
Molecular_info | Corresponding_CDS | C52B9.1a | |||||
C52B9.1b | |||||||
Corresponding_CDS_history | C52B9.1:wp142 | ||||||
Corresponding_transcript | C52B9.1a.1 | ||||||
C52B9.1b.1 | |||||||
C52B9.1b.2 | |||||||
Other_sequence (59) | |||||||
Associated_feature | WBsf648006 | ||||||
WBsf235568 | |||||||
Experimental_info | RNAi_result | WBRNAi00083978 | Inferred_automatically | RNAi_primary | |||
WBRNAi00094930 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043009 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012292 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030072 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1015717 | ||||||
Expr1030303 | |||||||
Expr1146973 | |||||||
Expr2010025 | |||||||
Expr2028266 | |||||||
Drives_construct | WBCnstr00037488 | ||||||
Construct_product | WBCnstr00037488 | ||||||
Microarray_results (24) | |||||||
Expression_cluster (149) | |||||||
Interaction (39) | |||||||
Map_info | Map | X | Position | -7.79874 | Error | 0.000946 | |
Positive | Positive_clone | C52B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5504 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00005916 | ||||||
WBPaper00006487 | |||||||
WBPaper00034497 | |||||||
WBPaper00038491 | |||||||
WBPaper00042257 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |