WormBase Tree Display for Gene: WBGene00000513
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| WBGene00000513 | Evidence | Paper_evidence | WBPaper00005916 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_III | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ckb-3 | |||||||
| Sequence_name | B0285.10 | ||||||||
| Molecular_name | B0285.10 | ||||||||
| B0285.10.1 | |||||||||
| CE40595 | |||||||||
| Other_name | CELE_B0285.10 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ckb-3 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ckb | ||||||||
| Allele (21) | |||||||||
| Strain | WBStrain00036954 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (51) | |||||||||
| Paralog | WBGene00000509 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000510 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000511 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000512 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000515 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000514 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ckb-3 encodes a putative choline kinase; CKB-1 through CKB-4 comprise arelated group ('B') of choline kinases. | Paper_evidence | WBPaper00005916 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Aug 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable choline kinase activity and ethanolamine kinase activity. Predicted to be involved in CDP-choline pathway and phosphatidylethanolamine biosynthetic process. Predicted to be located in cytoplasm. Expressed in Z1; Z4; pm6; and somatic gonad. Human ortholog(s) of this gene implicated in several diseases, including colon adenoma; megaconial type congenital muscular dystrophy; narcolepsy; and recurrent hypersomnia. Is an ortholog of human CHKA (choline kinase alpha) and CHKB (choline kinase beta). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:8619 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||
| DOID:8986 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||||
| DOID:0050912 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1937) | ||||||
| DOID:9884 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||||
| DOID:0110632 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||||
| DOID:1059 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1938) | ||||||
| Molecular_info | Corresponding_CDS | B0285.10 | |||||||
| Corresponding_CDS_history | B0285.10:wp168 | ||||||||
| Corresponding_transcript | B0285.10.1 | ||||||||
| Associated_feature | WBsf981453 | ||||||||
| WBsf224724 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00067371 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00083981 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009665 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038871 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005111 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12527 | ||||||||
| Expr14308 | |||||||||
| Expr1024598 | |||||||||
| Expr1143060 | |||||||||
| Expr2010028 | |||||||||
| Expr2028269 | |||||||||
| Drives_construct | WBCnstr00021454 | ||||||||
| WBCnstr00037485 | |||||||||
| WBCnstr00040532 | |||||||||
| Construct_product | WBCnstr00037485 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (63) | |||||||||
| SAGE_tag | SAGE:ttccacgtga | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:tgattcgatt | Strand | Antisense | |||||||
| SAGE:aaattgggattgtttga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:cccagaagag | Strand | Antisense | |||||||
| Interaction | WBInteraction000006825 | ||||||||
| WBInteraction000277773 | |||||||||
| WBInteraction000286609 | |||||||||
| WBInteraction000359701 | |||||||||
| Map_info | Map | III | Position | -3.1788 | Error | 0.000529 | |||
| Positive | Positive_clone | B0285 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005916 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00048690 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064641 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
