WormBase Tree Display for Gene: WBGene00006371
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| WBGene00006371 | Evidence | Paper_evidence | WBPaper00003608 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F35C8 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | syx-3 | Person_evidence | WBPerson3132 | |||||
| WBPerson203 | |||||||||
| Sequence_name | F35C8.4 | ||||||||
| Molecular_name | F35C8.4 | ||||||||
| F35C8.4.1 | |||||||||
| CE29788 | |||||||||
| Other_name | syn-1 | Person_evidence | WBPerson203 | ||||||
| CELE_F35C8.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | syx-3 | ||||||||
| DB_info | Database | AceView | gene | XF971 | |||||
| WormQTL | gene | WBGene00006371 | |||||||
| WormFlux | gene | WBGene00006371 | |||||||
| NDB | locus_tag | CELE_F35C8.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006371|UniProtKB=Q20024 | |||||||
| family | PTHR19957 | ||||||||
| NCBI | gene | 3565871 | |||||||
| RefSeq | protein | NM_001373297.3 | |||||||
| SwissProt | UniProtAcc | Q20024 | |||||||
| UniProt_GCRP | UniProtAcc | Q20024 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 Apr 2010 14:03:06 | WBPerson2970 | Name_change | CGC_name | syx-3 | ||||
| Other_name | syn-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syx | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00055170 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Contained_in_operon | CEOPX060 | ||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00006798 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006373 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022534 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009478 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012150 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006372 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006374 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | syx-3 encodes a syntaxin (t-SNARE) homologous to mammalian and Drosophila syntaxin 1; by homology, SYX-3 is a predicted plasma membrane protein that mediates fusion events between exocytic vesicles and the plasma membrane. | Paper_evidence | WBPaper00003608 | |||||
| WBPaper00013583 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Sep 2015 00:00:00 | ||||||||
| Automated_description | Predicted to enable SNAP receptor activity and SNARE binding activity. Involved in positive regulation of defecation and regulation of muscle contraction. Located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F35C8.4 | |||||||
| Corresponding_CDS_history | F35C8.4:wp271 | ||||||||
| Corresponding_transcript | F35C8.4.1 | ||||||||
| Other_sequence | Acan_isotig09475 | ||||||||
| JI171374.1 | |||||||||
| Associated_feature | WBsf235711 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00046311 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00069905 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063807 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9330 | ||||||||
| Expr1015515 | |||||||||
| Expr1032569 | |||||||||
| Expr1150199 | |||||||||
| Expr2017193 | |||||||||
| Expr2035329 | |||||||||
| Drives_construct | WBCnstr00013906 | ||||||||
| WBCnstr00037918 | |||||||||
| Construct_product | WBCnstr00008682 | ||||||||
| WBCnstr00037918 | |||||||||
| Antibody | WBAntibody00002804 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (89) | |||||||||
| Interaction | WBInteraction000522482 | ||||||||
| WBInteraction000522485 | |||||||||
| Map_info | Map | X | Position | -5.63246 | Error | 0.034117 | |||
| Positive | Positive_clone | F35C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003608 | ||||||||
| WBPaper00011049 | |||||||||
| WBPaper00022514 | |||||||||
| WBPaper00023395 | |||||||||
| WBPaper00029049 | |||||||||
| WBPaper00032376 | |||||||||
| WBPaper00038454 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
