WormBase Tree Display for Gene: WBGene00009478
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| WBGene00009478 | SMap | S_parent | Sequence | F36F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | syx-7 | Person_evidence | WBPerson3132 | |||||
| WBPerson203 | |||||||||
| Sequence_name | F36F2.4 | ||||||||
| Molecular_name | F36F2.4 | ||||||||
| F36F2.4.1 | |||||||||
| CE40328 | |||||||||
| Other_name | syn-13 | Person_evidence | WBPerson203 | ||||||
| WBPerson426 | |||||||||
| CELE_F36F2.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | syx-7 | ||||||||
| DB_info | Database | AceView | gene | 1J578 | |||||
| WormQTL | gene | WBGene00009478 | |||||||
| WormFlux | gene | WBGene00009478 | |||||||
| NDB | locus_tag | CELE_F36F2.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009478|UniProtKB=O62236 | |||||||
| family | PTHR19957 | ||||||||
| NCBI | gene | 172718 | |||||||
| RefSeq | protein | NM_060021.9 | |||||||
| TREEFAM | TREEFAM_ID | TF315607 | |||||||
| TrEMBL | UniProtAcc | O62236 | |||||||
| UniProt_GCRP | UniProtAcc | O62236 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Mar 2006 15:11:54 | WBPerson2970 | Name_change | CGC_name | syn-13 | ||||
| 3 | 16 Apr 2010 14:03:06 | WBPerson2970 | Name_change | CGC_name | syx-7 | ||||
| Other_name | syn-13 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syx | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP1516 | ||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00006371 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006372 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006373 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006374 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006798 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022534 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012150 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to be located in synaptic vesicle. Predicted to be part of SNARE complex. Is an ortholog of human STX12 (syntaxin 12) and STX7 (syntaxin 7). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36F2.4 | |||||||
| Corresponding_CDS_history | F36F2.4:wp161 | ||||||||
| Corresponding_transcript | F36F2.4.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf649435 | ||||||||
| WBsf664652 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116945 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033307 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046496 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065629 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063804 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12520 | ||||||||
| Expr1026334 | |||||||||
| Expr1034149 | |||||||||
| Expr1150374 | |||||||||
| Expr2017197 | |||||||||
| Expr2035333 | |||||||||
| Drives_construct | WBCnstr00017644 | ||||||||
| WBCnstr00017645 | |||||||||
| WBCnstr00037856 | |||||||||
| Construct_product | WBCnstr00019189 | ||||||||
| WBCnstr00020671 | |||||||||
| WBCnstr00037856 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (69) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | I | Position | 3.35805 | Error | 0.002273 | |||
| Positive | Positive_clone | F36F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003608 | ||||||||
| WBPaper00029049 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
