WormBase Tree Display for Gene: WBGene00009654
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WBGene00009654 | SMap | S_parent | Sequence | F43D9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | sly-1 | Person_evidence | WBPerson1963 | |||
Sequence_name | F43D9.3 | ||||||
Molecular_name | F43D9.3a | ||||||
F43D9.3a.1 | |||||||
CE44913 | |||||||
F43D9.3b | |||||||
CE44900 | |||||||
F43D9.3b.1 | |||||||
Other_name | phi-26 | Person_evidence | WBPerson2582 | ||||
CELE_F43D9.3 | Accession_evidence | NDB | BX284603 | ||||
Public_name | sly-1 | ||||||
DB_info | Database | AceView | gene | 3L601 | |||
WormQTL | gene | WBGene00009654 | |||||
WormFlux | gene | WBGene00009654 | |||||
NDB | locus_tag | CELE_F43D9.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00009654|UniProtKB=Q20364 | |||||
family | PTHR11679 | ||||||
NCBI | gene | 185707 | |||||
RefSeq | protein | NM_066916.4 | |||||
NM_001129225.4 | |||||||
TREEFAM | TREEFAM_ID | TF105740 | |||||
TrEMBL | UniProtAcc | A7LPF3 | |||||
Q20364 | |||||||
UniProt_GCRP | UniProtAcc | Q20364 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | sly | ||||||
Allele (235) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00005131 | ||||||
00005132 | |||||||
00005133 | |||||||
00005134 | |||||||
00117292 | |||||||
Ortholog (40) | |||||||
Paralog | WBGene00006757 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00016643 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00016960 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00020298 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00015130 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable syntaxin binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular protein transport. Predicted to be located in Golgi membrane. Is an ortholog of human SCFD1 (sec1 family domain containing 1). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F43D9.3a | |||||
F43D9.3b | |||||||
Corresponding_CDS_history | F43D9.3a:wp196 | ||||||
F43D9.3a:wp209 | |||||||
F43D9.3a:wp214 | |||||||
F43D9.3b:wp196 | |||||||
F43D9.3b:wp209 | |||||||
F43D9.3b:wp214 | |||||||
Corresponding_transcript | F43D9.3a.1 | ||||||
F43D9.3b.1 | |||||||
Other_sequence (68) | |||||||
Associated_feature (19) | |||||||
Experimental_info | RNAi_result (13) | ||||||
Expr_pattern | Expr1016675 | ||||||
Expr1034215 | |||||||
Expr1151050 | |||||||
Expr2015889 | |||||||
Expr2034122 | |||||||
Drives_construct | WBCnstr00032021 | ||||||
Construct_product | WBCnstr00032021 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (80) | |||||||
Interaction (46) | |||||||
Map_info | Map | III | Position | 3.06422 | |||
Positive | Positive_clone | F43D9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00030592 | ||||||
WBPaper00031865 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |