WormBase Tree Display for Gene: WBGene00015130
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| WBGene00015130 | SMap | S_parent | Sequence | B0303 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-33.1 | Paper_evidence | WBPaper00031805 | |||||
| Person_evidence | WBPerson426 | ||||||||
| Sequence_name | B0303.9 | ||||||||
| Molecular_name | B0303.9 | ||||||||
| B0303.9.1 | |||||||||
| CE00539 | |||||||||
| Other_name | CELE_B0303.9 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | vps-33.1 | ||||||||
| DB_info | Database | AceView | gene | 3J791 | |||||
| WormQTL | gene | WBGene00015130 | |||||||
| WormFlux | gene | WBGene00015130 | |||||||
| NDB | locus_tag | CELE_B0303.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015130|UniProtKB=P34260 | |||||||
| family | PTHR11679 | ||||||||
| NCBI | gene | 176221 | |||||||
| RefSeq | protein | NM_066519.5 | |||||||
| SwissProt | UniProtAcc | P34260 | |||||||
| TREEFAM | TREEFAM_ID | TF315126 | |||||||
| UniProt_GCRP | UniProtAcc | P34260 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 15 Mar 2007 17:00:31 | WBPerson2970 | Name_change | CGC_name | vps-33.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00037128 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00006757 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00009654 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016643 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016960 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020298 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be located in lysosome. Predicted to be part of CORVET complex and HOPS complex. Expressed in several structures, including body wall musculature; hypodermis; intestine; pharynx; and spermatheca. Is an ortholog of human VPS33A (VPS33A core subunit of CORVET and HOPS complexes). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0303.9 | |||||||
| Corresponding_CDS_history | B0303.9:wp102 | ||||||||
| Corresponding_transcript | B0303.9.1 | ||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf645437 | ||||||||
| WBsf225461 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr12006 | ||||||||
| Expr13084 | |||||||||
| Expr1025173 | |||||||||
| Expr1036467 | |||||||||
| Expr1143089 | |||||||||
| Expr2018023 | |||||||||
| Expr2036160 | |||||||||
| Drives_construct | WBCnstr00013597 | ||||||||
| WBCnstr00019956 | |||||||||
| WBCnstr00029064 | |||||||||
| WBCnstr00038574 | |||||||||
| Construct_product | WBCnstr00019956 | ||||||||
| WBCnstr00029064 | |||||||||
| WBCnstr00038083 | |||||||||
| WBCnstr00038084 | |||||||||
| WBCnstr00038574 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (79) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | III | Position | -0.096961 | Error | 0.002493 | |||
| Positive | Positive_clone | B0303 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028706 | ||||||||
| WBPaper00031212 | |||||||||
| WBPaper00031805 | |||||||||
| WBPaper00032272 | |||||||||
| WBPaper00032464 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00050040 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
