WormBase Tree Display for Gene: WBGene00012353

WBGene00012353 SMap: S_parent: Sequence: W09C5
  Identity: Version: 2
    Name: CGC_name: sac-2 Person_evidence: WBPerson3194
          Author_evidence: Sisi Yang
      Sequence_name: W09C5.7
      Molecular_name: W09C5.7a
        W09C5.7a.1
        CE20170
        W09C5.7b
        CE45488
        W09C5.7c
        CE45503
        W09C5.7b.1
        W09C5.7c.1
      Other_name: CELE_W09C5.7 Accession_evidence: NDB BX284601
      Public_name: sac-2
    DB_info: Database: AceView gene 1O249
        WormQTL gene WBGene00012353
        WormFlux gene WBGene00012353
        NDB locus_tag CELE_W09C5.7
        Panther gene CAEEL|WormBase=WBGene00012353|UniProtKB=Q9U330
          family PTHR45662
        NCBI gene 173236
        RefSeq protein NM_001265277.2
            NM_001265279.3
            NM_001377672.2
        TREEFAM TREEFAM_ID TF313543
        TrEMBL UniProtAcc E3W753
            Q9U330
            E3W752
        UniProt_GCRP UniProtAcc Q9U330
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Aug 2020 16:53:53 WBPerson1983 Name_change: CGC_name: sac-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sac
    Allele (63)
    Strain: WBStrain00032761
    RNASeq_FPKM (74)
    GO_annotation: 00008203
      00008204
      00008205
      00008206
      00008207
      00119506
    Ortholog (38)
    Paralog: WBGene00009264 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006763 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007620 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007912 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00012016 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00086546 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phosphatidylinositol-4-phosphate phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation and regulation of endocytic recycling. Predicted to be located in clathrin-coated endocytic vesicle and early endosome. Is an ortholog of human INPP5F (inositol polyphosphate-5-phosphatase F). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W09C5.7a
      W09C5.7b
      W09C5.7c
    Corresponding_transcript: W09C5.7a.1
      W09C5.7b.1
      W09C5.7c.1
    Other_sequence (15)
    Associated_feature: WBsf643812
      WBsf657030
      WBsf985920
      WBsf985921
      WBsf218752
  Experimental_info: RNAi_result: WBRNAi00036401 Inferred_automatically: RNAi_primary
      WBRNAi00062077 Inferred_automatically: RNAi_primary
      WBRNAi00116995 Inferred_automatically: RNAi_primary
      WBRNAi00004456 Inferred_automatically: RNAi_primary
      WBRNAi00055031 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013268
      Expr1035470
      Expr1158572
      Expr2006883
      Expr2025110
    Microarray_results (22)
    Expression_cluster (96)
    Interaction (31)
  Map_info: Map: I Position: 21.6356
    Positive: Positive_clone: W09C5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00034075
    WBPaper00038491
    WBPaper00055090
    WBPaper00060970
    WBPaper00062416
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene