WormBase Tree Display for Gene: WBGene00022182
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WBGene00022182 | SMap | S_parent | Sequence | Y71H2AM | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | swsn-3 | Person_evidence | WBPerson407 | |||
WBPerson552 | |||||||
Sequence_name | Y71H2AM.17 | ||||||
Molecular_name | Y71H2AM.17 | ||||||
Y71H2AM.17.1 | |||||||
CE39070 | |||||||
Other_name | CELE_Y71H2AM.17 | Accession_evidence | NDB | BX284603 | |||
Public_name | swsn-3 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | swsn | ||||||
Allele (189) | |||||||
Strain | WBStrain00031317 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00091846 | ||||||
00091847 | |||||||
00091848 | |||||||
00091849 | |||||||
00091850 | |||||||
00091851 | |||||||
00091852 | |||||||
Ortholog (39) | |||||||
Paralog | WBGene00001972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00001973 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00001974 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00008081 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00012209 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable nuclear receptor binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of SWI/SNF complex. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 5 and familial meningioma. Is an ortholog of human SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 20 May 2019 00:00:00 | ||||||
Potential_model | DOID:3565 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11109) | |||
DOID:0112368 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11109) | ||||
DOID:4586 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11109) | ||||
Models_disease_asserted | WBDOannot00000666 | ||||||
Molecular_info | Corresponding_CDS | Y71H2AM.17 | |||||
Corresponding_CDS_history | Y71H2AM.17:wp147 | ||||||
Corresponding_transcript | Y71H2AM.17.1 | ||||||
Other_sequence (39) | |||||||
Associated_feature | WBsf650887 | ||||||
WBsf976053 | |||||||
WBsf981416 | |||||||
WBsf991600 | |||||||
WBsf226302 | |||||||
Transcription_factor | WBTranscriptionFactor001149 | ||||||
Experimental_info | RNAi_result (49) | ||||||
Expr_pattern | Expr1028452 | ||||||
Expr1039780 | |||||||
Expr1161658 | |||||||
Expr2017158 | |||||||
Expr2035294 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (127) | |||||||
Interaction (40) | |||||||
Map_info | Map | III | Position | -10.4171 | Error | 0.079185 | |
Positive | Positive_clone | Y71H2AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00027412 | ||||||
WBPaper00038491 | |||||||
WBPaper00046494 | |||||||
WBPaper00048493 | |||||||
WBPaper00055090 | |||||||
WBPaper00064415 | |||||||
WBPaper00065308 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |