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WormBase Tree Display for Gene: WBGene00025006

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Name Class

WBGene00025006SMapS_parentSequencecb25.fpc0039
IdentityVersion2
NameCGC_nameCbr-unc-30From_analysisInferred_from_orthology
Sequence_nameCBG01820
Molecular_nameCBG01820
CBG01820.1
CBP00390
Other_nameCBG_01820Accession_evidenceNDBHE601298
Public_nameCbr-unc-30
DB_infoDatabaseNDBlocus_tagCBG_01820
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-30
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000022.56623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.9363From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3.2858From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.35486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.85041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.89335From_analysisRNASeq.briggsae.WBls:0000002.control_median
3.17695From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000339.7503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
43.473From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
47.1958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
44.1526From_analysisRNASeq.briggsae.WBls:0000003.control_mean
45.5117From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000429.0137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
30.8606From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
32.7076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
27.3323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
27.9698From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
29.4909From_analysisRNASeq.briggsae.WBls:0000004.control_mean
30.4311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:00000240.896999From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
3.99767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
4.78166From_analysisRNASeq.briggsae.WBls:0000024.control_mean
4.86911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
4.91745From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
4.94694From_analysisRNASeq.briggsae.WBls:0000024.control_median
5.02476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
5.23511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
5.34369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
4.23324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
4.6092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
6.26331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:00000270.388967From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.2314From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.32345From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.34998From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
14.8888From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.79069From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.21479From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000354.42732From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.297836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.46319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.64167From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.82016From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1.8656From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.88122From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411.14473From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.2006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.26988From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.30589From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.33917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.53905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.20218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.21334From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.2245From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1.27504From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630.290523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.315599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.5189From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.59341From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.613653From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.781317From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.574636From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.603531From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.853315From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001012.56623From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.14929From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.89335From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.46299From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00128434
00128435
OrthologWBGene00006766Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00062733Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00136008Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CBOVI.g8957Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2906Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15240Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13827Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6959Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g2585Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14409Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8628Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP40.g2365Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_01031.g15429Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-30Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10922Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00041.g2203Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19439Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014504Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_40144600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g12228Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00287313Trichuris murisFrom_analysisWormBase-Compara
WBGene00298058Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00024188Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00024297Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00024319Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027146Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030291Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030749Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033797Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034255Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034700Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035242Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035388Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036280Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036289Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036290Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037052Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037726Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038604Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040880Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042823Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00270809Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and DNA-binding transcription factor activity. Is an ortholog of C. elegans unc-30. In C. elegans, unc-30 is involved in neuron differentiation; positive regulation of transcription by RNA polymerase II; and regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG01820
Corresponding_CDS_historyCBG01820:bp194
Corresponding_transcriptCBG01820.1
Other_sequenceCBC05195_1
Acan_isotig10301
Dviv_isotig23393
Oden_isotig21606
Experimental_infoExpr_patternExpr1062653
Microarray_resultsGPL8303_CB6_WBGene00025006_A
GPL8303_CB6_WBGene00025006_B
GPL8303_CB6_WBGene00025006_C
GPL8303_CB6_WBGene00025006_D
GPL8303_CB6_WBGene00025006_E
GPL14143_CBG01820_538-597_0.923_11_B
GPL14143_CBG01820_722-781_0.933_10_C
GPL14143_CBG01820_890-949_0.967_1_A
MethodGene