WormBase Tree Display for Gene: WBGene00030815

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WBGene00030815	SMap	S_parent	Sequence	cb25.fpc2193
	Identity	Version	2
		Name	CGC_name	Cbr-cgh-1	From_analysis	Inferred_from_orthology
			Sequence_name	CBG09177
			Molecular_name	CBG09177
				CBG09177.1
				CBP02241
			Other_name	CBG_09177	Accession_evidence	NDB	HE601302
			Public_name	Cbr-cgh-1
		DB_info	Database	NDB	locus_tag	CBG_09177
		Species	Caenorhabditis briggsae
		History	Version_change	1	08 Sep 2004 10:52:00	WBPerson1971	Event	Imported	Initial conversion from brigace
				2	20 Sep 2007 17:07:04	WBPerson2970	Name_change	CGC_name	Cbr-cgh-1
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	cgh
		RNASeq_FPKM	WBls:0000002	523.715	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
				632.756	From_analysis	RNASeq.briggsae.WBls:0000002.control_mean
				666.202	From_analysis	RNASeq.briggsae.WBls:0000002.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
				708.352	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
				1273.64	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
				687.277	From_analysis	RNASeq.briggsae.WBls:0000002.control_median
				792.977	From_analysis	RNASeq.briggsae.WBls:0000002.control_mean
			WBls:0000003	654.305	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
				770.57	From_analysis	RNASeq.briggsae.WBls:0000003.control_mean
						RNASeq.briggsae.WBls:0000003.control_median
				886.836	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
				722.581	From_analysis	RNASeq.briggsae.WBls:0000003.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
				754.574	From_analysis	RNASeq.briggsae.WBls:0000003.control_mean
			WBls:0000004	364.021	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
						RNASeq.briggsae.WBls:0000004.control_median
				365.892	From_analysis	RNASeq.briggsae.WBls:0000004.control_mean
						RNASeq.briggsae.WBls:0000004.control_median
				367.764	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
				344.096	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
				360.993	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
				399.897	From_analysis	RNASeq.briggsae.WBls:0000004.control_mean
				562.609	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
			WBls:0000024	13.5807	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
				25.9104	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
				28.8388	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
				32.1242	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
				35.1508	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
				46.2728	From_analysis	RNASeq.briggsae.WBls:0000024.control_median
				52.4267	From_analysis	RNASeq.briggsae.WBls:0000024.control_mean
				57.3948	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
				85.0369	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
				11.5067	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
				15.5787	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
				24.4682	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
			WBls:0000027	10.4383	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
				34.9553	From_analysis	RNASeq.briggsae.WBls:0000027.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
				40.7792	From_analysis	RNASeq.briggsae.WBls:0000027.control_mean
				76.9441	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
				39.0266	From_analysis	RNASeq.briggsae.WBls:0000027.control_median
				41.3589	From_analysis	RNASeq.briggsae.WBls:0000027.control_mean
				43.098	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
			WBls:0000035	74.1692	From_analysis	RNASeq.briggsae.WBls:0000035.control_mean
						RNASeq.briggsae.WBls:0000035.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
			WBls:0000038	101.55	From_analysis	RNASeq.briggsae.WBls:0000038.control_median
				103.392	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
				122.464	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
				53.3205	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
				94.7212	From_analysis	RNASeq.briggsae.WBls:0000038.control_mean
				99.7082	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
			WBls:0000041	1261.8	From_analysis	RNASeq.briggsae.WBls:0000041.control_mean
				1544.79	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
				1565.67	From_analysis	RNASeq.briggsae.WBls:0000041.control_median
				1586.55	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
				1683.4	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
				232.461	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
				215.728	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
				249.909	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
				897.349	From_analysis	RNASeq.briggsae.WBls:0000041.control_median
				918.806	From_analysis	RNASeq.briggsae.WBls:0000041.control_mean
			WBls:0000063	1012.33	From_analysis	RNASeq.briggsae.WBls:0000063.control_mean
				1419.78	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
				870.878	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
				899.116	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
				923.863	From_analysis	RNASeq.briggsae.WBls:0000063.control_median
						RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
				948.03	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
				666.941	From_analysis	RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
				911.49	From_analysis	RNASeq.briggsae.WBls:0000063.control_median
				954.768	From_analysis	RNASeq.briggsae.WBls:0000063.control_mean
			WBls:0000101	364.021	From_analysis	RNASeq.briggsae.total_over_all_stages.control_median
				519.488	From_analysis	RNASeq.briggsae.total_over_all_stages.control_mean
				362.507	From_analysis	RNASeq.briggsae.total_over_all_stages.control_median
				513.283	From_analysis	RNASeq.briggsae.total_over_all_stages.control_mean
		GO_annotation	00134244
			00134245
		Ortholog	WBGene00000479	Caenorhabditis elegans	From_analysis	Hillier-set
						OrthoMCL
						OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00077354	Caenorhabditis remanei	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00143378	Caenorhabditis brenneri	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00092157	Pristionchus pacificus	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00136106	Caenorhabditis japonica	From_analysis	Inparanoid_8
						WormBase-Compara
			CBOVI.g5598	Caenorhabditis bovis	From_analysis	WormBase-Compara
			CSP21.g6028	Caenorhabditis parvicauda	From_analysis	WormBase-Compara
			CSP26.g3039	Caenorhabditis zanzibari	From_analysis	WormBase-Compara
			CSP28.g11324	Caenorhabditis panamensis	From_analysis	WormBase-Compara
			CSP29.g10502	Caenorhabditis becei	From_analysis	WormBase-Compara
			CSP31.g20967	Caenorhabditis uteleia	From_analysis	WormBase-Compara
			CSP32.g3344	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP32.g3345	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP32.g3346	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP38.g3224	Caenorhabditis quiockensis	From_analysis	WormBase-Compara
			CSP39.g6871	Caenorhabditis waitukubuli	From_analysis	WormBase-Compara
			CSP39.g7905	Caenorhabditis waitukubuli	From_analysis	WormBase-Compara
			CSP40.g5875	Caenorhabditis tribulationis	From_analysis	WormBase-Compara
			Cang_2012_03_13_00001.g42	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_08527.g21559	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_15925.g25208	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_16533.g25390	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cni-cgh-1	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Csp11.Scaffold629.g9876	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			Csp11.Scaffold629.g9877	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			Csp5_scaffold_01243.g19536	Caenorhabditis sinica	From_analysis	WormBase-Compara
			FL83_07346	Caenorhabditis latens	From_analysis	WormBase-Compara
			GCK72_009011	Caenorhabditis remanei	From_analysis	WormBase-Compara
			OTIPU.nOt.2.0.1.g08409	Oscheius tipulae	From_analysis	WormBase-Compara
			OTIPU.nOt.2.0.1.g10182	Oscheius tipulae	From_analysis	WormBase-Compara
			Pan_g16814	Panagrellus redivivus	From_analysis	WormBase-Compara
			Pan_g22031	Panagrellus redivivus	From_analysis	WormBase-Compara
			Pan_g22057	Panagrellus redivivus	From_analysis	WormBase-Compara
			Sp34_30050200	Caenorhabditis inopinata	From_analysis	WormBase-Compara
			Sp34_30050300	Caenorhabditis inopinata	From_analysis	WormBase-Compara
			Sp34_30050400	Caenorhabditis inopinata	From_analysis	WormBase-Compara
			WBGene00222319	Brugia malayi	From_analysis	WormBase-Compara
			chrIII_pilon.g8171	Caenorhabditis elegans	From_analysis	WormBase-Compara
			WBGene00244748	Onchocerca volvulus	From_analysis	WormBase-Compara
			WBGene00259244	Strongyloides ratti	From_analysis	WormBase-Compara
			WBGene00293336	Trichuris muris	From_analysis	WormBase-Compara
		Paralog	WBGene00023542	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00024046	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00026110	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00026478	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00026745	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00026766	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00026902	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00027664	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00029014	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00029230	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00030740	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00030870	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00031298	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00031335	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00031575	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00032524	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00032620	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00033030	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00033411	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00033451	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00033648	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00033744	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00034417	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00034589	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00034647	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00035298	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00036400	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00036557	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00039604	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00040788	Caenorhabditis briggsae	From_analysis	WormBase-Compara
			WBGene00271602	Caenorhabditis briggsae	From_analysis	WormBase-Compara
		Structured_description	Automated_description	Predicted to enable ATP binding activity and nucleic acid binding activity. Is an ortholog of C. elegans cgh-1. In C. elegans, cgh-1 is involved in several processes, including P-body assembly; determination of adult lifespan; and negative regulation of translation.	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info	Corresponding_CDS	CBG09177
		Corresponding_CDS_history	CBG09177:bp194
		Corresponding_transcript	CBG09177.1
		Other_sequence	CBC01046_1
			CGC00855_1
			PPC00034_1
			EX501467.1
			TS03070
			SRC02895_1
			ACC07332_1
			XI05074
			CRC03820_1
			EY460212.1
			BUC00107_1
			EY461707.1
			PP01158
			EX501048.1
			FC551390.1
			TMC01353_1
			HGC05392_1
			JI214499.1
			HG01011
			Acan_isotig16758
			CR04473
			Tcir_isotig15191
			Oden_isotig18462
			HGC12137_1
			BXC01490_1
			CRC10075_1
			EX535982.1
			JI165745.1
			CBC03736_1
			FC546823.1
			FC555673.1
			CJC08288_1
			SR03193
			CBC01554_1
			EY459626.1
			DI02051
			EX916137.1
			HGC02507_1
			ES570878.1
			Dviv_isotig22895
			FC550389.1
			HG11796
			TM01663
			CJC13232_1
			XIC04134_1
			FC819473.1
			HG05217
			JI165585.1
			FC554982.1
			CJC03098_1
			ES564773.1
			EX564375.1
			BXC05010_1
			AM157797.1
			EY464182.1
			FC553737.1
			TSC00175_1
			CR10376
			DIC01678_1
			FC553320.1
			GE626393.1
			TS00858
			CGC00485_1
			BUC00755_1
			DI02386
			PP02300
			PPC01408_1
			Name_isotig02193
			SR02107
			EY462312.1
			ES564269.1
			HBC21987_1
			ES561815.1
			EX564040.1
			ES567370.1
			FC818250.1
			CR00705
			Acan_isotig07746
			ES566154.1
			ODC00055_1
			CGC01295_1
			FC819862.1
			TM03230
			BUC00957_1
	Experimental_info	Expr_pattern	Expr1055656
		Microarray_results	GPL8303_CB6_WBGene00030815_A
			GPL8303_CB6_WBGene00030815_B
			GPL14143_CBG09177_787-846_0.903_3_C
			GPL14143_CBG09177_894-953_0.865_15_A
			GPL14143_CBG09177_942-1001_0.863_16_B
	Method	Gene