WormBase Tree Display for Gene: WBGene00086546
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| WBGene00086546 | SMap | S_parent | Sequence | C50C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | inpp-5K | Author_evidence | WBPerson555 | |||||
| Sequence_name | C50C3.7 | ||||||||
| Molecular_name | C50C3.7 | ||||||||
| C50C3.7.1 | |||||||||
| CE00123 | |||||||||
| Other_name | cil-1 | Author_evidence | WBPerson555 | ||||||
| CELE_C50C3.7 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | inpp-5K | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 Jun 2008 15:25:15 | WBPerson2970 | Event | Created | |||
| 2 | 15 Dec 2010 16:15:12 | WBPerson2970 | Event | Acquires_merge | WBGene00016802 | ||||
| 3 | 10 Jul 2023 23:47:10 | WBPerson51134 | Name_change | CGC_name | inpp-5K | ||||
| Other_name | cil-1 | ||||||||
| Acquires_merge | WBGene00016802 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | inpp | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Contained_in_operon | CEOP3484 | ||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00006763 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007620 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012016 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007912 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009264 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012353 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enables phosphatidylinositol phosphate phosphatase activity. Acts upstream of or within with a positive effect on flagellated sperm motility. Located in several cellular components, including neuronal cell body; nucleus; and plasma membrane bounded cell projection. Expressed in PVDL and PVDR. Human ortholog(s) of this gene implicated in congenital muscular dystrophy with cataracts and intellectual disability. Is an ortholog of human INPP5J (inositol polyphosphate-5-phosphatase J) and INPP5K (inositol polyphosphate-5-phosphatase K). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080197 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:33882) | ||||
| Molecular_info | Corresponding_CDS | C50C3.7 | |||||||
| Corresponding_transcript | C50C3.7.1 | ||||||||
| Other_sequence | CR00431 | ||||||||
| CBC10379_1 | |||||||||
| Dviv_isotig19742 | |||||||||
| CRC08417_1 | |||||||||
| Dviv_isotig19743 | |||||||||
| PPC15966_1 | |||||||||
| Associated_feature | WBsf667137 | ||||||||
| WBsf667138 | |||||||||
| WBsf976241 | |||||||||
| WBsf976242 | |||||||||
| WBsf227087 | |||||||||
| WBsf227088 | |||||||||
| WBsf227089 | |||||||||
| WBsf227090 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00005436 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030018 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012199 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042876 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12821 | ||||||||
| Expr13848 | |||||||||
| Expr1040416 | |||||||||
| Expr1146855 | |||||||||
| Expr2010014 | |||||||||
| Expr2028255 | |||||||||
| Drives_construct | WBCnstr00023180 | ||||||||
| WBCnstr00040206 | |||||||||
| Construct_product | WBCnstr00022884 | ||||||||
| WBCnstr00022885 | |||||||||
| WBCnstr00023180 | |||||||||
| WBCnstr00040206 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (109) | |||||||||
| WBProcess | WBbiopr:00000012 | ||||||||
| Map_info | Map | III | Position | -0.37497 | Error | 0.000172 | |||
| Positive | Positive_clone | C50C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029208 | ||||||||
| WBPaper00031689 | |||||||||
| WBPaper00035231 | |||||||||
| WBPaper00054995 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061449 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
