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WormBase Tree Display for Gene: WBGene00094535

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Name Class

WBGene00094535SMapS_parentSequencePPA_ChrV
IdentityVersion4
NameCGC_namePpa-apg-1From_analysisInferred_from_orthology
Sequence_namePPA04981
Molecular_namePPA04981
PPA04981.1
PP67708
Other_nameGENEPREDICTION_SNAP300000062446
GENEPREDICTION_SNAP300000062448
UMA-S311-8.43Person_evidenceWBPerson606
Public_namePpa-apg-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
218 Nov 2010 13:24:32WBPerson2970Name_changeCGC_nameremoved
324 Nov 2017 09:46:48WBPerson4055EventAcquires_mergeWBGene00094537
420 Mar 2018 10:26:11WBPerson4025Name_changeCGC_namePpa-apg-1
Acquires_mergeWBGene00094537
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classapg
RNASeq_FPKMWBls:00000322.45587From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.78534From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
2.45587From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
2.90015From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00175447
00175448
00175449
Ortholog (30)
ParalogWBGene00093010Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00111430Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281351Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be part of membrane coat. Is an ortholog of C. elegans apg-1. In C. elegans, apg-1 is involved in apical protein localization and protein secretion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA04981
Corresponding_transcriptPPA04981.1
Other_sequence (31)
Experimental_infoMicroarray_resultsGPL14372_Probes_25598
GPL14372_Probes_25600
GPL14372_Probes_79729
GPL14372_Probes_79730
GPL14372_Probes_79731
GPL14372_Probes_79732
GPL14372_Probes_79734
Expression_clusterWBPaper00041466:PP_germline-ablation_regulated
RemarkPPA04981 replaces Ppa-apg-1 as Public_nameCurator_confirmedWBPerson2970
MethodGene