Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00141508

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00141508SMapS_parentSequenceCbre_Contig1320
IdentityVersion2
NameCGC_nameCbn-sde-2.2From_analysisInferred_from_orthology
Sequence_nameCBN02783
Molecular_nameCBN02783
CBN02783.1
CN04023
Public_nameCbn-sde-2.2
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:50WBPerson4055EventImportedfrom NGASP
204 Jun 2020 14:38:22WBPerson1983Name_changeCGC_nameCbn-sde-2.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsde
RNASeq_FPKMWBls:000000210.0332From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
10.4781From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
15.5544From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
17.5087From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
19.7467From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.90029From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
6.86375From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
7.28734From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
8.66027From_analysisRNASeq.brenneri.WBls:0000002.control_median
9.03725From_analysisRNASeq.brenneri.WBls:0000002.control_mean
WBls:00000041.15931From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
2.31862From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002412.5443From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
13.1361From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
15.2344From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
5.53077From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
7.30737From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:00000380.686941From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
0.777767From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
0.868593From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:00000410.145733From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
0.172946From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
1.01847From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
11.4186From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
1.14885From_analysisRNASeq.brenneri.WBls:0000041.control_median
11.9854From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
1.27924From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
1.31231From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
1.97492From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
2.67834From_analysisRNASeq.brenneri.WBls:0000041.control_mean
3.44601From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
3.83268From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
6.26714From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
WBls:00001011.31231From_analysisRNASeq.brenneri.total_over_all_stages.control_median
4.42258From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00009996Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00032626Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00052844Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129623Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g1063Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1891Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g517Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5227Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18776Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1118Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15651Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14118Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13915Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8647Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7708Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00225.g7378Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-F53F4.14Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14132Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00119.g4857Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03774Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018619Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03118Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g2657Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50164700Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00224573Brugia malayiFrom_analysisWormBase-Compara
chrV_pilon.g16293Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243732Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00290223Trichuris murisFrom_analysisWormBase-Compara
WBGene00301168Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00162587Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00156411Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00158907Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Replication stress response SDE2 C-terminal; Silencing defective 2 N-terminal ubiquitin domain; and Sde2, N-terminal ubiquitin domain. Is an ortholog of C. elegans sde-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN02783
Corresponding_transcriptCBN02783.1
Other_sequenceCRC07825_1
Acan_isotig09386
Dviv_isotig09038
Dviv_isotig09037
Hbac_isotig01029
CR00703
ACC07966_1
Dviv_isotig09039
Experimental_infoMicroarray_resultsGPL14142_CBN02783_506-565_0.887_15_B
GPL14142_CBN02783_1303-1362_0.651_150_A
GPL14142_CBN02783_1378-1437_0.823_47_C
MethodGene