WormBase Tree Display for Gene: WBGene00149586

WBGene00149586 SMap: S_parent: Sequence: Cbre_Contig211
  Identity: Version: 3
    Name: CGC_name: Cbn-smg-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN10861
      Molecular_name: CBN10861
        CBN10861.1
        CN35737
      Public_name: Cbn-smg-1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:51 WBPerson4055 Event: Imported: from NGASP
        2 05 May 2009 14:30:25 WBPerson615 Event: Acquires_merge: WBGene00164267
        3 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cbn-smg-1
      Acquires_merge: WBGene00164267
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: smg
    RNASeq_FPKM: WBls:0000002 0.290698 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
        0.639112 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        0.960207 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        1.21593 From_analysis: RNASeq.brenneri.WBls:0000002.control_median
        1.2364 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
        1.47166 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        1.53939 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
        2.04377 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        2.38862 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
        3.03049 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
      WBls:0000004 11.1131 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        5.55655 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        4.91152 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        5.50492 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        6.69431 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        6.87951 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        8.52241 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
      WBls:0000038 4.54535 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        4.8469 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        5.14845 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
            RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
        2.74793 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
        3.28095 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
        3.33293 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
        3.64733 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
        3.71927 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
        3.81021 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
        3.93712 From_analysis: RNASeq.brenneri.WBls:0000041.control_median
        3.98773 From_analysis: RNASeq.brenneri.WBls:0000041.control_mean
        4.06403 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
        4.27534 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
        4.50993 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
        5.36856 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
        5.74176 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
        6.27007 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
        6.28428 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
        6.75106 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
      WBls:0000101 3.12821 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
        3.28095 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
    GO_annotation: 00211013
      00211014
      00211015
    Ortholog: WBGene00004879 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033641 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00056175 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00096033 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00125840 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g10093 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g1489 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g3327 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23578 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3394 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6926 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13433 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10597 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g4497 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4830 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00009.g720 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-smg-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold555.g3733 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00667.g14210 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13459 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001850 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09789 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g3025 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10338900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00223091 Brugia malayi From_analysis: WormBase-Compara
      chrI_pilon.g1268 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237921 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288546 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00193401 Caenorhabditis brenneri From_analysis: Inparanoid_8
            GeneACeDB-Compara
      WBGene00194458 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00141226 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00142003 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00142668 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00152145 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00153628 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00159327 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00163639 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00191328 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00192765 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00193897 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00194249 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00153172 Caenorhabditis brenneri From_analysis: GeneACeDB-Compara
      WBGene00156210 Caenorhabditis brenneri From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and phosphorylation. Is an ortholog of C. elegans smg-1. In C. elegans, smg-1 is involved in male genitalia development; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and obsolete hermaphrodite genitalia development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN10861
    Corresponding_CDS_history: CBN10861:np203
    Corresponding_transcript: CBN10861.1
    Other_sequence: AYC02188_1
      JI163890.1
      CSC01836_1
      CRC05171_1
      CR09903
      FD514278.1
      AE00740
  Method: Gene