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WormBase Tree Display for Gene: WBGene00096033

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Name Class

WBGene00096033SMapS_parentSequencePPA_ChrV
IdentityVersion5
NameCGC_namePpa-smg-1Inferred_automaticallyfrom gene merge
Sequence_namePPA06479
Molecular_namePPA06479
PPA06479.1
PP71822
Other_nameGENEPREDICTION_SNAP300000062845
GENEPREDICTION_SNAP300000062846
GENEPREDICTION_SNAP300000062847
UMA-S554-0.43Person_evidenceWBPerson606
Public_namePpa-smg-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
217 Nov 2017 15:19:42WBPerson4055Name_changeCGC_namePpa-smg-1
324 Nov 2017 09:46:49WBPerson4055EventAcquires_mergeWBGene00096034
424 Nov 2017 09:46:49WBPerson4055EventAcquires_mergeWBGene00096035
524 Nov 2017 09:46:52WBPerson4055EventAcquires_mergeWBGene00205205
Acquires_mergeWBGene00096035
WBGene00096034
WBGene00205205
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmg
RNASeq_FPKMWBls:00000321.79843From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.79843From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
2.1923From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
4.77846From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00176242
00176243
00176244
OrthologWBGene00004879Caenorhabditis elegansFrom_analysisInparanoid_8
WBGene00033641Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00056175Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00125840Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00149586Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00193401Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00194458Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00226925Brugia malayiFrom_analysisWormBase-Compara
CSP21.g10976Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
WBGene00260647Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00091513Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094280Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00104775Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00202917Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein serine/threonine kinase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and phosphorylation. Is an ortholog of C. elegans smg-1. In C. elegans, smg-1 is involved in male genitalia development; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and obsolete hermaphrodite genitalia development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA06479
Corresponding_transcriptPPA06479.1
Other_sequenceOden_isotig17619
AE00740
Oden_isotig17620
Acan_isotig07564
PPC19840_1
AYC02188_1
PPC15430_1
Experimental_infoMicroarray_results (13)
Expression_clusterWBPaper00041207:PP_dauer_up
WBPaper00041466:PP_germline-ablation_regulated
WBPaper00041606:PP_X.nematophila_regulated
MethodGene