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WormBase Tree Display for Gene: WBGene00154374

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Name Class

WBGene00154374SMapS_parentSequenceCbre_Contig473
IdentityVersion1
NameCGC_nameCbn-tni-4From_analysisInferred_from_orthology
Sequence_nameCBN15649
Molecular_nameCBN15649
CBN15649.1
CN07584
Other_nameCBN15649
Public_nameCbn-tni-4
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-tni-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtni
RNASeq_FPKMWBls:000000210.3752From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
11.0789From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
14.7124From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
17.1501From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
24.4484From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
2.62327From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
5.82949From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
8.82542From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
9.50432From_analysisRNASeq.brenneri.WBls:0000002.control_mean
9.60031From_analysisRNASeq.brenneri.WBls:0000002.control_median
WBls:00000040.54327From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
1.08654From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
337.95From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
352.955From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
434.51From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
488.729From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
500.418From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:000003858.0959From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
59.7725From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
61.4491From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:000004117.7377From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
21.3085From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
21.8639From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
28.2312From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
29.1851From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
30.7169From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
30.9496From_analysisRNASeq.brenneri.WBls:0000041.control_median
31.1824From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
32.6485From_analysisRNASeq.brenneri.WBls:0000041.control_mean
37.6791From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
39.3444From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
44.6064From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
50.1103From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
54.2158From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
54.9156From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
61.2789From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
WBls:000010121.3085From_analysisRNASeq.brenneri.total_over_all_stages.control_median
23.8081From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00214819
OrthologWBGene00006586Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00039178Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00064039Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00073643Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00099181Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00124043Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g11369Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9730Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13802Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g13803Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6477Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8051Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21209Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1658Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18273Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g24357Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3920Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1122Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00004.g371Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_24834.g27231Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13281Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g13284Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold41.g215Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_04123.g32140Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11862Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013509Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10405Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g10779Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19178Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40337400Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00113105Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00226422Brugia malayiFrom_analysisWormBase-Compara
chrIV_pilon.g10374Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243637Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00266364Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291450Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00142179Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00150453Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00158790Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00161700Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to be part of troponin complex. Is an ortholog of C. elegans tni-4. In C. elegans, tni-4 is involved in embryo development and pharyngeal pumping.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN15649
Corresponding_transcriptCBN15649.1
Other_sequenceCBC14384_1
Tcir_isotig09427
Oden_isotig22783
EX557968.1
Dviv_isotig19950
AE03052
FG349237.1
MC04314
Acan_isotig12380
ES409523.1
FG582423.1
MCC04359_1
AYC01510_1
EY458521.1
MethodGene