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WormBase Tree Display for Gene: WBGene00193806

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Name Class

WBGene00193806SMapS_parentSequenceCbre_Contig13
IdentityVersion2
NameCGC_nameCbn-sbsp-1From_analysisInferred_from_orthology
Sequence_nameCBN31841
Molecular_nameCBN31841
CBN31841.1
CN32467
Public_nameCbn-sbsp-1
SpeciesCaenorhabditis brenneri
HistoryVersion_change120 May 2009 11:55:53WBPerson1847EventCreated
228 May 2021 19:05:19WBPerson1983Name_changeCGC_nameCbn-sbsp-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsbsp
RNASeq_FPKMWBls:00000021.78021From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.38821From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
2.56736From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
2.93249From_analysisRNASeq.brenneri.WBls:0000002.control_mean
2.96106From_analysisRNASeq.brenneri.WBls:0000002.control_median
3.35475From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
3.60494From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
4.93802From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
5.14522From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
5.54623From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000041.0817From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
2.16341From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002411.1975From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
11.4631From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
12.4068From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
8.46064From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
9.97783From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:00000382.57493From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
2.71015From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
2.84537From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:000004110.7153From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
11.0893From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
14.5796From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
22.1376From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
2.96529From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
3.21294From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
4.70864From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
5.37908From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
5.49507From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
5.84472From_analysisRNASeq.brenneri.WBls:0000041.control_median
6.19437From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
6.4053From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
6.45866From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
6.82322From_analysisRNASeq.brenneri.WBls:0000041.control_mean
9.83033From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
WBls:00001013.35475From_analysisRNASeq.brenneri.total_over_all_stages.control_median
4.71226From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00011269Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00037749Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00055829Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00115083Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00132105Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g5002Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7193Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8298Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18580Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22589Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21117Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12189Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7658Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11376Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g15777Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g385Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-R17.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7286Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00257.g8110Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11467Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010392Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11648Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9946Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30111000Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00225657Brugia malayiFrom_analysisWormBase-Compara
chrIII_pilon.g8946Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245128Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00259791Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285922Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Somatomedin-B and thrombospondin type-1 domain-containing protein; Thrombospondin type-1 (TSP1) repeat; Thrombospondin type-1 (TSP1) repeat superfamily; Somatomedin B domain; and Somatomedin B-like domain superfamily. Is an ortholog of C. elegans sbsp-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN31841
Corresponding_transcriptCBN31841.1
Other_sequenceFC540457.1
JO469447.1
ACC14698_1
PT04809
JI173426.1
FC548848.1
Experimental_infoMicroarray_resultsGPL14142_CBN31841_943-1002_0.413_225_A
GPL14142_CBN31841_1058-1117_0.938_2_C
GPL14142_CBN31841_1270-1329_0.806_66_B
MethodGene