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WormBase Tree Display for Gene: WBGene00248685

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Name Class

WBGene00248685SMapS_parentSequenceOVOC_OM1a_31
IdentityVersion2
NameCGC_nameOvo-syx-7From_analysisInferred_from_orthology
Sequence_nameOVOC11876
Molecular_nameOVOC11876
OVOC11876.1
OVP10666
Public_nameOvo-syx-7
SpeciesOnchocerca volvulus
HistoryVersion_change129 Nov 2013 15:05:34WBPerson3111EventImportedMAKER import
224 Jan 2014 16:01:34WBPerson4055Name_changeCGC_nameOvo-syx-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsyx
RNASeq_FPKMWBls:000010130.9065From_analysisRNASeq.ovolvulus.total_over_all_stages.control_median
32.1437From_analysisRNASeq.ovolvulus.total_over_all_stages.control_mean
WBls:0000104102.484From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978157
1.0273From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450840
1.09184From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450842
19.5848From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978164
32.2123From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978159
34.3629From_analysisRNASeq.ovolvulus.WBls:0000104.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978161
34.9018From_analysisRNASeq.ovolvulus.WBls:0000104.control_mean
42.9738From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978158
43.9038From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978156
45.4441From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450841
48.1261From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978163
4.84619From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529045
62.0406From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978160
6.77418From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529044
69.0524From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.ERP001350.ERX200394
9.60244From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.SRP056861.SRX978162
WBls:000010723.6746From_analysisRNASeq.ovolvulus.WBls:0000107.control_mean
RNASeq.ovolvulus.WBls:0000107.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010818.293From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
36.3128From_analysisRNASeq.ovolvulus.WBls:0000108.control_mean
41.7918From_analysisRNASeq.ovolvulus.WBls:0000108.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
48.8535From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:000066421.422From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
25.5114From_analysisRNASeq.ovolvulus.WBls:0000664.control_mean
RNASeq.ovolvulus.WBls:0000664.control_median
29.6007From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
GO_annotation00262608
00262609
OrthologWBGene00159566Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00162862Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00033368Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00224133Brugia malayiFrom_analysisWormBase-Compara
WBGene00009478Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00132467Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g9658Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g577Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20150Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14404Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1139Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g831Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g15275Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24202Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00152.g5694Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-syx-7Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold459.g1446Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00218.g7303Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_002474Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_002477Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11734Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8830Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10117810Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00059954Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00086109Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrI_pilon.g1723Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00281849Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00261288Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286015Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00239064Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00242557Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244303Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244919Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00246007Onchocerca volvulusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans syx-7.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSOVOC11876
Corresponding_transcriptOVOC11876.1
Other_sequenceACC10830_1
TSC08523_1
HC07656
AYC03868_2
AS14040
GPC02813_1
FG619444.1
Tcol_isotig02336
XIC02580_1
EX501229.1
PT02879
JI468192.1
XI00534
Tcol_isotig02338
AE00153
EY468662.1
ES413290.1
JI169590.1
Hbac_isotig04380
FC809897.1
GP02356
JI461020.1
EY465671.1
Tcol_isotig02337
PP02040
SRC02069_1
HBC02106_1
PPC02145_1
AS07735
Oden_isotig15281
EL889568.1
HCC04860_1
ASC13845_1
FC815258.1
FC547539.1
CBC01451_1
Tcir_isotig20579
MethodGene