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WormBase Tree Display for Gene: WBGene00275329

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Name Class

WBGene00275329SMapS_parentSequencePPA_ChrI
IdentityVersion6
NameCGC_namePpa-hmp-2From_analysisInferred_from_orthology
Sequence_namePPA36960
Molecular_namePPA36960
PPA36960.1
PP68432
Public_namePpa-hmp-2
SpeciesPristionchus pacificus
HistoryVersion_change124 Nov 2017 16:14:21WBPerson4055EventCreated
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_namePpa-hmp-2
308 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:26WBPerson1983Name_changeCGC_namePpa-hmp-2
528 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:29WBPerson1983Name_changeCGC_namePpa-hmp-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhmp
RNASeq_FPKMWBls:000003252.6564From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010141.3292From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
52.6564From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
71.3312From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00282289
00282290
Ortholog (31)
ParalogWBGene00118218Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable cadherin binding activity. Predicted to be involved in cell adhesion. Is an ortholog of C. elegans hmp-2. In C. elegans, hmp-2 is involved in several processes, including cytoskeleton organization; embryonic morphogenesis; and left/right axis specification.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA36960
Corresponding_transcriptPPA36960.1
Other_sequence (28)
Experimental_infoMicroarray_resultsGPL14372_Probes_68528
GPL14372_Probes_68529
GPL14372_Probes_68530
GPL14372_Probes_68531
GPL14372_Probes_68532
GPL14372_Probes_68533
GPL14372_Probes_68535
GPL14372_Probes_68536
Expression_clusterWBPaper00041466:PP_germline-ablation_regulated
Remark[190208 pad] The CGC name Ppa-hmp-2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-hmp-2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene