WormBase Tree Display for Sequence: T09F3

T09F3 DNA: T09F3 24094
  SMap: S_child: Gene_child: WBGene00011663 9086 10162
        WBGene00001683 7508 8728
        WBGene00198634 3354 3144
        WBGene00303079 4547 4699
        WBGene00011662 4533 6993
        WBGene00011664 10257 12699
      CDS_child: T09F3.2 4740 6474
        T09F3.2a:wp264 4740 6474
        T09F3.2b:wp264 4547 4699
        T09F3.3 7516 8641
        T09F3.4 9117 10117
        T09F3.4:wp107 8859 12599
        T09F3.5 10257 12599
        T09F3.5:wp121 10257 12599
        T09F3.7 4547 4699
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g30n11_x21_II_p 10257 12593
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g50n11_x21_II_p 9117 10099
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g91n11_x21_II_p 10672 11213
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g30n11e2k54_x21_II_p 10672 11212
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g11n11_x21_II_p 4740 6471
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g93_x21_II_p 135 292
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g103n11_x21_II_p 10257 11104
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g9n11_x21_II_p 4740 6471
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g137_x21_II_p 11168 12135
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g97_x21_II_p 9813 10057
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g147_x21_II_p 12525 12587
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g100_x21_II_p 11890 12135
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g58n11_x21_II_p 135 292
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g168_x21_II_p 12118 12341
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g97n11_x21_II_p 135 292
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g152_x21_II_p 9089 9306
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g171_x21_II_p 10817 10888
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g126_x21_II_p 9371 9791
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g22n11_x21_II_p 4740 6471
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g140_x21_II_p 11096 11937
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g105_x21_II_p 9813 10051
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g131_x21_II_p 11890 11937
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g73_x21_II_p 11108 11158
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g86_x21_II_p 11757 11850
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g121_x21_II_p 12137 12237
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g26n11_x21_II_p 4740 6471
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g103_x21_II_p 9813 10087
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g117_x21_II_p 11543 11605
        RNASEQ_embryo_him-8_20dC_post-L1_g116_x21_II_p 11890 12587
        RNASEQ_embryo_him-8_20dC_post-L1_g87_x21_II_p 9813 9872
        RNASEQ_embryo_him-8_20dC_post-L1_g32n11_x21_II_p 4740 6471
        RNASEQ_embryo_him-8_20dC_post-L1_g107_x21_II_p 9183 9277
        RNASEQ_embryo_him-8_20dC_post-L1_g65n11_x21_II_p 10257 12590
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g168_x21_II_p 12043 12326
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g164_x21_II_p 10380 10798
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g173_x21_II_p 11507 11693
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g68n11_x21_II_p 135 292
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g28n11_x21_II_p 4740 6471
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g82_x21_II_p 9813 10087
        RNASEQ_L4_soma_JK1107_no_DNaseI_g23n11_x21_II_p 4740 6471
        RNASEQ_L4_soma_JK1107_no_DNaseI_g158_x21_II_p 11890 11946
        RNASEQ_L4_soma_JK1107_no_DNaseI_g196_x21_II_p 12160 12305
        RNASEQ_L4_soma_JK1107_no_DNaseI_g79n11_x21_II_p 135 292
        RNASEQ_L4_soma_JK1107_no_DNaseI_g131_x21_II_p 11501 11681
        RNASEQ_L4_soma_JK1107_no_DNaseI_g81_x21_II_p 9813 10072
        RNASEQ_L4_soma_JK1107_no_DNaseI_g69n11_x21_II_p 10257 10942
        RNASEQ_L4_soma_JK1107_no_DNaseI_g68n11_x21_II_p 9117 9755
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g115_x21_II_p 12043 12596
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g99_x21_II_p 11096 11949
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g72n11_x21_II_p 9117 10105
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g18n11_x21_II_p 4740 6471
        RNASEQ_early_embryo_g60n11_x21_II_p 10257 12596
        RNASEQ_early_embryo_g75n11_x21t1_II_p 123 292
        RNASEQ_early_embryo_g79_x21_II_p 9813 10066
        RNASEQ_early_embryo_g38n11_x21_II_p 4740 6471
        RNASEQ_early_embryo_g85n11_x21_II_p 10672 11213
        RNASEQ_early_embryo_g60n11e2k67_x21_II_p 10672 11215
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g80n11_x21_II_p 10672 11159
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g80n11e2k54_x21_II_p 10672 11212
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g57n11_x21_II_p 4740 6471
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g56n11_x21_II_p 123 292
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g105n11_x21_II_p 10257 12596
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g94_x21_II_p 9813 10066
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g83n11e2k54_x21_II_p 10672 11212
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g61n11_x21_II_p 135 292
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g87n11_x21_II_p 10672 11159
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g78_x21_II_p 9813 10114
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g28n11_x21_II_p 4740 6471
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g116n11_x21_II_p 10257 12596
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g114_x21_II_p 9813 10096
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g50n11_x21_II_p 135 292
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g108_x21_II_p 10380 12389
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g95_x21_II_p 11890 12392
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g25n11_x21_II_p 4740 6471
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g24n11_x21_II_p 4740 6471
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g105_x21_II_p 10380 12596
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g42n11_x21_II_p 135 292
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g98_x21_II_p 9813 10048
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g84_x21_II_p 10672 11159
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g65n11e2k54_x21_II_p 10257 11212
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g88_x21_II_p 10976 11159
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g33n11_x21_II_p 4740 6471
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g141_x21_II_p 9813 10114
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g118_x21_II_p 10976 11892
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g70n11_x21_II_p 10257 10936
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g85n11_x21_II_p 135 292
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g108_x21_II_p 12043 12302
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g17n11_x21_II_p 4740 6471
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g42n11_x21_II_p 9117 10114
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g122n11_x21_II_p 10817 12596
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g59n11_x21_II_p 10817 11159
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g103_x21_II_p 946 1029
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g29n11e2k54_x21_II_p 10672 11212
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g29n11_x21_II_p 10257 11159
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g80_x21_II_p 10 1002
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g94n11_x21_II_p 10672 11213
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g40n11_x21_II_p 9117 10078
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g37n11_x21_II_p 10257 12587
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g37n11e2k54_x21_II_p 10672 11212
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g13n11_x21_II_p 4740 6471
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g97_x21_II_p 123 292
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g98n11_x21_II_p 10672 11213
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g42n11_x21_II_p 9117 10108
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g19n11_x21_II_p 4740 6471
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g48n11_x21_II_p 10257 12575
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g48n11e2k54_x21_II_p 10672 11212
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g73n11_x21_II_p 135 292
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g86n11_x21_II_p 11890 12161
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g85n11_x21_II_p 135 292
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g18n11_x21_II_p 4740 6471
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g116n11_x21_II_p 10257 12260
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g38n11_x21_II_p 9117 10087
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g50n11e2k54_x21_II_p 10672 11212
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g50n11_x21_II_p 10672 11159
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g51n11_x21_II_p 10257 12596
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g51n11e2k54_x21_II_p 10672 11212
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g79n11_x21_II_p 11890 12161
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g77_x21_II_p 123 292
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g48n11_x21_II_p 9117 10114
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g19n11_x21_II_p 4740 6471
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g96n11_x21_II_p 10672 11213
        T09F3.gc1 10 1260
        T09F3.gc2 4740 6474
        T09F3.gc3 7516 8641
        T09F3.gc4 8859 12599
        ContigII.elegans.jigsaw.2644.mRNA2644 9020 10169
        ContigII.elegans.jigsaw.2645.mRNA2645 10220 12698
        ContigII.elegans.jigsaw.2643.mRNA2643 7480 8727
        ContigII.elegans.jigsaw.2642.mRNA2642 4520 7112
        AG1201_RIT2P.1097.T1 2871 3038
        AG1201_T09F3.2.T1 4740 6474
        AG1201_T09F3.3.T1 7516 8641
        AG1201_T09F3.4.T2 9117 10117
        AG1201_T09F3.4.T1 9813 10117
        AG1201_T09F3.5.T4 10257 12599
        AG1201_T09F3.5.T5 10257 12599
        AG1201_T09F3.5.T3 10380 12599
        AG1201_T09F3.5.T2 10634 12599
        AG1201_T09F3.5.T1 10817 12599
      Transcript: T09F3.6 3354 3144
        T09F3.2.1 4533 6993
        T09F3.3.1 7508 8728
        T09F3.4.1 9086 10162
        T09F3.5.1 10257 12699
        T09F3.7.1 4547 4699
      PCR_product (14)
      Allele (327)
      Oligo_set: Aff_T09F3.2 5769 6474
        Aff_T09F3.4 11950 12599
      Feature_object (260)
      Feature_data: T09F3:Polysome 1 24094
        T09F3:TranscriptionallyActiveRegion 1 24094
        T09F3:ChIPSeqTF 1 24094
        T09F3:TRF 1 24094
        T09F3:Dust 1 24094
        T09F3:inverted 1 24094
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_II
    Overlap_right: E04D5 23991
    Overlap_left: C07E3
    Clone_left_end (2)
    Clone_right_end: C07E3 351
  DB_info (3)
  Origin: From_author: Lloyd CR
    From_laboratory: HX
    Date_directory: 950130
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: T09F3
  Properties: Genomic_canonical
    Checksum: MD5: 0ac578d5f549f189c0e1317057d41171
    Status: Finished: 30 Jan 1995 00:00:00
      Submitted: 19 Apr 1995 00:00:00
      Annotated: 18 Apr 1995 00:00:00
  Map: Sequence-II Ends: Left: 6149
        Right: 6177
  Interpolated_map_position: II 2.56023
  Assembly_tags: Clone left end 1 4 Beginning of T09F3
      23991 23994 Beginning of E04D5
    Clone right end 348 351 End of C07E3
    annotation 12794 12794 No C on one clone, but present on 14 other clones
  Method: Genomic_canonical