WormBase Tree Display for Variation: WBVar00143019
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WBVar00143019 | Evidence | Paper_evidence | WBPaper00005152 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPaper00005325 | |||||||||
Name (3) | |||||||||
Sequence_details | SMap | S_parent | Sequence | F48E8 | |||||
Flanking_sequences | ttgtctgggcaaagacgaatctcgtcggat | cggcttctcccgttgccgtgacgttcaggg | |||||||
Mapping_target | F48E8 | ||||||||
Type_of_mutation | Substitution | g | a | ||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain (17) | |||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00003055 | |||||||
Transcript | F48E8.1b.1 (12) | ||||||||
F48E8.1c.1 (12) | |||||||||
F48E8.1a.1 (12) | |||||||||
Interactor | WBInteraction000009116 | ||||||||
WBInteraction000503035 | |||||||||
WBInteraction000537301 | |||||||||
Genetics | Interpolated_map_position | III | -1.62777 | ||||||
Mapping_data | In_2_point | 276 | |||||||
579 | |||||||||
2725 | |||||||||
3796 | |||||||||
3797 | |||||||||
5516 | |||||||||
6014 | |||||||||
7160 | |||||||||
In_multi_point | 77 | ||||||||
90 | |||||||||
276 | |||||||||
326 | |||||||||
355 | |||||||||
378 | |||||||||
389 | |||||||||
407 | |||||||||
483 | |||||||||
494 | |||||||||
496 | |||||||||
497 | |||||||||
504 | |||||||||
507 | |||||||||
557 | |||||||||
558 | |||||||||
559 | |||||||||
586 | |||||||||
590 | |||||||||
755 | |||||||||
858 | |||||||||
859 | |||||||||
867 | |||||||||
869 | |||||||||
875 | |||||||||
876 | |||||||||
879 | |||||||||
1091 | |||||||||
1092 | |||||||||
1096 | |||||||||
1098 | |||||||||
1101 | |||||||||
1102 | |||||||||
1107 | |||||||||
1410 | |||||||||
1411 | |||||||||
1444 | |||||||||
1487 | |||||||||
1488 | |||||||||
1490 | |||||||||
1498 | |||||||||
1501 | |||||||||
1716 | |||||||||
1723 | |||||||||
1724 | |||||||||
1725 | |||||||||
1865 | |||||||||
2019 | |||||||||
2056 | |||||||||
2058 | |||||||||
2075 | |||||||||
2101 | |||||||||
2180 | |||||||||
2181 | |||||||||
2182 | |||||||||
2183 | |||||||||
2184 | |||||||||
2185 | |||||||||
2407 | |||||||||
2741 | |||||||||
2743 | |||||||||
3304 | |||||||||
In_pos_neg_data (2) | |||||||||
Description | Phenotype | WBPhenotype:0000022 | Paper_evidence | WBPaper00000031 | |||||
WBPaper00000906 | |||||||||
WBPaper00003454 | |||||||||
WBPaper00005747 | |||||||||
Person_evidence | WBPerson261 | ||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson712 | |||||||||
WBPerson2987 | |||||||||
Remark | about 50% longer than wildtype at all stages, markedly tapering tail and head | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Table 1 | Paper_evidence | WBPaper00005747 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Recessive | Paper_evidence | WBPaper00000906 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | |||||
Curator_confirmed | WBPerson2987 | ||||||||
Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000342 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Male bursa elongated. | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000370 | Paper_evidence | WBPaper00053410 | |||||||
Person_evidence | WBPerson261 | ||||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPerson3569 | |||||||||
Remark | Eggs elongated. | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Figure 2, S1 | Paper_evidence | WBPaper00053410 | |||||||
Curator_confirmed | WBPerson3569 | ||||||||
WBPhenotype:0000961 | Paper_evidence | WBPaper00005747 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | Table 1 | Paper_evidence | WBPaper00005747 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | |||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0001412 | Paper_evidence | WBPaper00005747 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | Authors report "multiple or discontinuous ala" (Table 1) | Paper_evidence | WBPaper00005747 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | |||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0001517 | Paper_evidence | WBPaper00005747 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | Authors report "abnormal branched annuli (lateral hypodermis)" and "wide annuli" (Table 1) | Paper_evidence | WBPaper00005747 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | |||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002117 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | low penetrance tendency to form constriction behind head, may result in auto-decapitation | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_not_observed | WBPhenotype:0000505 | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Males are not Ram. | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006941 | PATO:0000460 | Paper_evidence | WBPaper00001328 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Life_stage | WBls:0000056 | PATO:0000460 | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 20C | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Genotype | him-5(e1490) | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001184 | Paper_evidence | WBPaper00032966 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Abnormally sized mutants did not display enhanced fat accumulation | Paper_evidence | WBPaper00032966 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Treatment | Nile Red staining | Paper_evidence | WBPaper00032966 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Reference (12) | |||||||||
Remark | Variation stub/paper connection generated from the May 2021 NN VFP dataset. | ||||||||
Created by WBPerson51134 from the NN_VFP_triage_pipeline | |||||||||
Method | Substitution_allele |