WormBase Tree Display for Variation: WBVar00107860
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| WBVar00107860 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00107860 | ||||
| Other_name | cbs43381 | |||||
| cb43381 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.8306045G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0058 | ||
| Flanking_sequences | ctttcatctcaagcaattgaatatg | ttggtcttgagagttttcgtgttct | ||||
| Mapping_target | cb25.fpc0058 | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest (22) | |||||
| Polymorphic_strain_digest | GGTACC | Acc65I, Asp718I, KpnI | 635 340 25 | |||
| GTAC | AfaI, Csp6I, RsaI | 633 340 27 | ||||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 554 385 61 | ||||
| CTTAAG | AflII, BfrI, BspTI, Bst98I, MspCI, Vha464I | 1000 | ||||
| AGCT | AluI | 326 216 183 126 77 54 18 | ||||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 560 324 116 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 460 439 101 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 676 324 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 560 324 116 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 507 302 191 | ||||
| RGCY | CviJI, CviTI | 266 206 183 93 54 41 33 30 30 21 18 15 10 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 674 326 | ||||
| CAC | HindI | 147 132 126 116 104 80 65 48 45 38 24 19 19 18 12 5 2 | ||||
| GANTC | HinfI | 589 148 147 48 37 31 | ||||
| TCNNGA | Hpy178III, Hpy188III | 686 94 70 43 40 29 25 13 | ||||
| TCNGA | Hpy188I | 415 340 111 67 36 31 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 747 253 | ||||
| TTAA | MseI, Tru1I, Tru9I | 953 47 | ||||
| CTYRAG | SmlI | 513 325 162 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 311 282 192 75 69 32 19 12 8 | ||||
| GAWTC | TfiI | 784 148 37 31 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00025861 | ||||
| Transcript | CBG02894.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG02894.1:c.363C>T | |||||
| HGVSp | CBP06375.1:p.Asn121%3D | |||||
| cDNA_position | 393 | |||||
| CDS_position | 363 | |||||
| Protein_position | 121 | |||||
| Exon_number | 3/8 | |||||
| Codon_change | aaC/aaT | |||||
| Amino_acid_change | N | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
