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WormBase Tree Display for Gene: WBGene00025861

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Name Class

WBGene00025861SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-vha-6From_analysisInferred_from_orthology
Sequence_nameCBG02894
Molecular_nameCBG02894
CBG02894.1
CBP06375
Other_nameCBG_02894Accession_evidenceNDBHE601438
Public_nameCbr-vha-6
DB_infoDatabaseNDBlocus_tagCBG_02894
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vha-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvha
Allele (23)
RNASeq_FPKMWBls:0000002104.252From_analysisRNASeq.briggsae.WBls:0000002.control_mean
160.047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
61.3608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
91.3472From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
47.5502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
76.354From_analysisRNASeq.briggsae.WBls:0000002.control_median
90.0763From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.053119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.91848From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
3.78384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
2.63221From_analysisRNASeq.briggsae.WBls:0000003.control_mean
4.05968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000419.8097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
20.531From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
21.2523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
18.8807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
19.7291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
19.932From_analysisRNASeq.briggsae.WBls:0000004.control_mean
19.988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027127.181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
21.263From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
51.4864From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.01528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
141.363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
73.9556From_analysisRNASeq.briggsae.WBls:0000027.control_mean
74.222From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:0000035138.481From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038106.2From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
133.795From_analysisRNASeq.briggsae.WBls:0000038.control_median
151.999From_analysisRNASeq.briggsae.WBls:0000038.control_mean
161.39From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
264.844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
75.5613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004134.5329From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
35.4323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
41.4698From_analysisRNASeq.briggsae.WBls:0000041.control_median
43.3059From_analysisRNASeq.briggsae.WBls:0000041.control_mean
47.5073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
55.7509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
25.1835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
33.3674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
34.9826From_analysisRNASeq.briggsae.WBls:0000041.control_median
38.6291From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:0000063183.982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
188.581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
198.712From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
205.847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
216.115From_analysisRNASeq.briggsae.WBls:0000063.control_mean
303.451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
193.646From_analysisRNASeq.briggsae.WBls:0000063.control_median
194.943From_analysisRNASeq.briggsae.WBls:0000063.control_mean
89.0868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101109.243From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
91.3472From_analysisRNASeq.briggsae.total_over_all_stages.control_median
68.4611From_analysisRNASeq.briggsae.total_over_all_stages.control_median
93.8751From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00129284
00129285
00129286
00129287
Ortholog (35)
ParalogWBGene00024808Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026344Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029076Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V0 domain. Is an ortholog of C. elegans vha-6. In C. elegans, vha-6 is involved in nematode larval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02894
Corresponding_CDS_historyCBG02894:bp194
Corresponding_transcriptCBG02894.1
Other_sequence (64)
Experimental_infoExpr_patternExpr1063905
Microarray_resultsGPL8303_CB6_WBGene00025861_A
GPL8303_CB6_WBGene00025861_B
GPL14143_CBG02894_2113-2172_0.624_295_C
GPL14143_CBG02894_2248-2307_0.634_280_B
GPL14143_CBG02894_2505-2564_0.699_174_A
MethodGene