WormBase Tree Display for Variation: WBVar00065822

WBVar00065822 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00065822
    Other_name: cbs41420
      cb41420 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.372032T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: atgttttgaggatgtggacgaactt gtgaagaatccacaactcgtattcg
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 1000
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 1000
        CCNNGG BsaJI, BseDI, BssECI, SecI 1000
        CCATGG Bsp19I, NcoI 1000
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 1000
        CCRYGG BstDSI, BtgI, DsaI 1000
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 634 211 151 4
        TCGA EsaBC3I, TaqI, TthHB8I 415 336 110 76 63
        CAC HindI 185 180 110 91 88 87 51 34 33 33 28 27 21 13 9 9 1
        TCNNGA Hpy178III, Hpy188III 237 203 184 132 76 67 56 24 15 6
        GTNNAC Hpy8I 454 403 88 37 18
      Polymorphic_strain_digest (11)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024280
    Transcript: CBG00979.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG00979.1:c.4875T>C
        HGVSp: CBP41590.1:p.Phe1625%3D
        cDNA_position: 4875
        CDS_position: 4875
        Protein_position: 1625
        Exon_number: 14/16
        Codon_change: ttT/ttC
        Amino_acid_change: F
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 2 sequencing read(s)
  Method: SNP