WormBase Tree Display for Variation: WBVar00143365
expand all nodes | collapse all nodes | view schema
WBVar00143365 | Evidence | Paper_evidence | WBPaper00005629 | ||||
---|---|---|---|---|---|---|---|
Name (3) | |||||||
Sequence_details | SMap | S_parent | Sequence | T28F12 | |||
Flanking_sequences | caaaggaggcgattaccaaattccgcgcgt | gttatttcacaatttgacggtaagggtgca | |||||
Mapping_target | T28F12 | ||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00005629 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00004189 | ||||||
WBStrain00004365 | |||||||
WBStrain00034029 | |||||||
WBStrain00034031 | |||||||
Laboratory | CB | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00006796 | |||||
Transcript | T28F12.2d.7 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.7:c.-111-332G>A | ||||||
Intron_number | 3/7 | ||||||
T28F12.2a.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | T28F12.2a.1:c.1229G>A | ||||||
HGVSp | CE21219:p.Trp410Ter | ||||||
cDNA_position | 1233 | ||||||
CDS_position | 1229 | ||||||
Protein_position | 410 | ||||||
Exon_number | 8/12 | ||||||
Codon_change | tGg/tAg | ||||||
Amino_acid_change | W/* | ||||||
T28F12.2b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | T28F12.2b.1:c.1118G>A | ||||||
HGVSp | CE21220:p.Trp373Ter | ||||||
cDNA_position | 1584 | ||||||
CDS_position | 1118 | ||||||
Protein_position | 373 | ||||||
Exon_number | 8/12 | ||||||
Codon_change | tGg/tAg | ||||||
Amino_acid_change | W/* | ||||||
T28F12.2d.2 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.2:c.-131G>A | ||||||
cDNA_position | 1241 | ||||||
Exon_number | 7/12 | ||||||
T28F12.2d.3 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.3:c.-131G>A | ||||||
cDNA_position | 1593 | ||||||
Exon_number | 7/12 | ||||||
T28F12.2d.8 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.8:c.-111-332G>A | ||||||
Intron_number | 2/6 | ||||||
T28F12.2c.2 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2c.2:c.-317G>A | ||||||
cDNA_position | 1426 | ||||||
Exon_number | 7/11 | ||||||
T28F12.2d.9 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.9:c.-131G>A | ||||||
cDNA_position | 738 | ||||||
Exon_number | 1/6 | ||||||
T28F12.2h.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2h.1:c.1015-332G>A | ||||||
Intron_number | 6/8 | ||||||
T28F12.2d.4 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.4:c.-111-332G>A | ||||||
Intron_number | 7/11 | ||||||
T28F12.2e.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2e.1:c.1126-332G>A | ||||||
Intron_number | 7/9 | ||||||
T28F12.2d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.1:c.-111-332G>A | ||||||
Intron_number | 7/11 | ||||||
T28F12.2c.1 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2c.1:c.-317G>A | ||||||
cDNA_position | 1611 | ||||||
Exon_number | 7/11 | ||||||
T28F12.2d.5 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.5:c.-131G>A | ||||||
cDNA_position | 1113 | ||||||
Exon_number | 6/11 | ||||||
T28F12.2d.6 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2d.6:c.-131G>A | ||||||
cDNA_position | 777 | ||||||
Exon_number | 4/9 | ||||||
T28F12.2g.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | T28F12.2g.1:c.1007G>A | ||||||
HGVSp | CE37795:p.Trp336Ter | ||||||
cDNA_position | 1007 | ||||||
CDS_position | 1007 | ||||||
Protein_position | 336 | ||||||
Exon_number | 6/9 | ||||||
Codon_change | tGg/tAg | ||||||
Amino_acid_change | W/* | ||||||
T28F12.2f.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T28F12.2f.1:c.1237-332G>A | ||||||
Intron_number | 8/10 | ||||||
Interactor | WBInteraction000007722 | ||||||
WBInteraction000051964 | |||||||
WBInteraction000052185 | |||||||
WBInteraction000052340 | |||||||
WBInteraction000052341 | |||||||
WBInteraction000501054 | |||||||
WBInteraction000501055 | |||||||
WBInteraction000501056 | |||||||
Genetics | Interpolated_map_position | V | -5.18024 | ||||
Mapping_data | In_2_point | 125 | |||||
In_multi_point | 143 | ||||||
1524 | |||||||
3277 | |||||||
In_pos_neg_data | 846 | ||||||
2870 | |||||||
2871 | |||||||
2872 | |||||||
Description (2) | |||||||
Reference (12) | |||||||
Method | Substitution_allele |