WormBase Tree Display for Variation: WBVar00002889
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| WBVar00002889 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00002889 | ||||
| Other_name | cbs2744 | |||||
| cb2744 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.1197789T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4030a2 | ||
| Flanking_sequences | tctactcttatcactatattttgga | ccaaagattgctgagctggtgtcaa | ||||
| Mapping_target | cb25.fpc4030a2 | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 624 376 | ||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 1000 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 1000 | ||||
| GGATCC | BamHI | 503 497 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 374 336 129 105 43 13 | ||||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 941 59 | ||||
| TCGCGA | Bsp68I, NruI | 1000 | ||||
| RGATCY | BstX2I, BstYI, MflI, PsuI, XhoII | 503 392 105 | ||||
| CAC | HindI | 197 131 99 75 68 63 42 39 34 33 32 30 28 26 25 16 16 16 15 9 6 | ||||
| TCNNGA | Hpy178III, Hpy188III | 363 284 135 85 65 57 11 | ||||
| Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 453 376 171 | |||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 503 497 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 503 497 | ||||
| GGATCC | BamHI | 1000 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 374 336 234 43 13 | ||||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 831 110 59 | ||||
| TCGCGA | Bsp68I, NruI | 829 171 | ||||
| RGATCY | BstX2I, BstYI, MflI, PsuI, XhoII | 608 392 | ||||
| CAC | HindI | 197 131 99 75 68 63 42 39 34 33 32 31 30 28 26 16 16 16 15 9 | ||||
| TCNNGA | Hpy178III, Hpy188III | 363 210 135 85 74 65 57 11 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00035859 | ||||
| Transcript | CBG15713.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG15713.1:c.636T>C | |||||
| HGVSp | CBP03819.1:p.Asp212%3D | |||||
| cDNA_position | 658 | |||||
| CDS_position | 636 | |||||
| Protein_position | 212 | |||||
| Exon_number | 3/8 | |||||
| Codon_change | gaT/gaC | |||||
| Amino_acid_change | D | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
