WormBase Tree Display for Variation: WBVar00002894
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| WBVar00002894 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00002894 | ||||
| Other_name | cbs2745 | |||||
| cb2745 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.1197459G>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4030a2 | ||
| Flanking_sequences | gggagaaggagacaggggtgccggt | gcgaagattactgtagcaatgagtg | ||||
| Mapping_target | cb25.fpc4030a2 | |||||
| Type_of_mutation | Substitution | G | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 954 46 | ||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 1000 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 765 235 | ||||
| GGATCC | BamHI | 827 173 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 373 336 129 105 44 13 | ||||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 611 389 | ||||
| TCGCGA | Bsp68I, NruI | 1000 | ||||
| RGATCY | BstX2I, BstYI, MflI, PsuI, XhoII | 722 173 105 | ||||
| CAC | HindI | 197 129 116 99 63 58 56 51 39 34 33 30 25 16 16 15 9 8 6 | ||||
| TCNNGA | Hpy178III, Hpy188III | 290 284 200 125 90 11 | ||||
| Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 501 453 46 | |||
| GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 827 173 | ||||
| GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 592 235 173 | ||||
| GGATCC | BamHI | 1000 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 373 336 234 44 13 | ||||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 501 389 110 | ||||
| TCGCGA | Bsp68I, NruI | 501 499 | ||||
| RGATCY | BstX2I, BstYI, MflI, PsuI, XhoII | 722 278 | ||||
| CAC | HindI | 197 129 116 99 63 58 56 51 39 34 33 31 30 16 16 15 9 8 | ||||
| TCNNGA | Hpy178III, Hpy188III | 290 210 200 125 90 74 11 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00035859 | ||||
| Transcript | CBG15713.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG15713.1:c.306G>C | |||||
| HGVSp | CBP03819.1:p.Val102%3D | |||||
| cDNA_position | 328 | |||||
| CDS_position | 306 | |||||
| Protein_position | 102 | |||||
| Exon_number | 3/8 | |||||
| Codon_change | gtG/gtC | |||||
| Amino_acid_change | V | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
