WormBase Tree Display for Variation: WBVar00036949

WBVar00036949 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00036949
    Other_name: cbs28109
      cb28109 Paper_evidence: WBPaper00055507
    HGVSg: chrV:g.15482008C>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0090
    Flanking_sequences: cttctatcaaagtacggtatcaaac ttcaaaaatcattccgatacttatg
    Mapping_target: cb25.fpc0090
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 500 226 87 64 63 60
        CCANNNNNNTGG BstXI 809 191
        CAC HindI 246 159 126 70 65 43 42 38 37 36 36 34 31 24 11 2
        GANTC HinfI 259 222 176 127 99 79 38
        TCNGA Hpy188I 263 156 142 110 102 82 72 49 15 9
        CGWCG Hpy99I 1000
        ACGT HpyCH4IV, MaeII, TaiI, TscI 536 262 153 49
        CAYNNNNRTG MslI, SmiMI 807 193
        AATT Sse9I, TasI, Tsp509I, TspEI 226 170 108 101 64 60 55 50 47 44 32 24 12 7
        GAWTC TfiI 358 222 176 127 79 38
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 492 226 87 64 63 60 8
        CCANNNNNNTGG BstXI 00
        CAC HindI 246 159 126 70 65 42 38 37 36 36 34 31 27 24 16 11 2
        GANTC HinfI 435 222 127 99 79 38
        TCNGA Hpy188I 263 156 142 110 89 82 72 49 15 13 9
        CGWCG Hpy99I 684 316
        ACGT HpyCH4IV, MaeII, TaiI, TscI 689 262 49
        CAYNNNNRTG MslI, SmiMI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 226 170 108 93 64 60 55 50 47 44 32 24 12 8 7
        GAWTC TfiI 534 222 127 79 38
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027447
    Transcript: CBG04847a.1 VEP_consequence: missense_variant,splice_region_variant
        VEP_impact: MODERATE
        HGVSc: CBG04847a.1:c.217G>A
        HGVSp: CBP42238.1:p.Glu73Lys
        cDNA_position: 238
        CDS_position: 217
        Protein_position: 73
        Exon_number: 3/8
        Codon_change: Gaa/Aaa
        Amino_acid_change: E/K
      CBG04847b.1 VEP_consequence: missense_variant,splice_region_variant
        VEP_impact: MODERATE
        HGVSc: CBG04847b.1:c.217G>A
        HGVSp: CBP44940.1:p.Glu73Lys
        cDNA_position: 238
        CDS_position: 217
        Protein_position: 73
        Exon_number: 3/8
        Codon_change: Gaa/Aaa
        Amino_acid_change: E/K
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP