WormBase Tree Display for Variation: WBVar00040364
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WBVar00040364 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
WBPaper00055507 | |||||
Name | Public_name | WBVar00040364 | |||
Other_name | cbs30510 | ||||
cb30510 | Paper_evidence | WBPaper00055507 | |||
HGVSg | chrV:g.18801914G>T | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0129 | |
Flanking_sequences | gcatttacggtattacggtagttaa | acagatttttttcaaaatttgaaaa | |||
Mapping_target | cb25.fpc0129 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP (2) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00027983 | |||
Transcript | CBG05555a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | CBG05555a.1:c.4806+61C>A | ||||
Intron_number | 21/34 | ||||
CBG05555b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG05555b.1:c.4665+61C>A | ||||
Intron_number | 19/32 | ||||
CBG05555c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG05555c.1:c.4806+61C>A | ||||
Intron_number | 20/32 | ||||
CBG05555d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG05555d.1:c.4665+61C>A | ||||
Intron_number | 19/30 | ||||
CBG05555f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG05555f.1:c.*374+61C>A | ||||
Intron_number | 20/30 | ||||
CBG05555f.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG05555f.2:c.*374+61C>A | ||||
Intron_number | 20/30 | ||||
CBG05555f.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG05555f.3:c.*374+61C>A | ||||
Intron_number | 20/22 | ||||
Reference | WBPaper00030778 | ||||
WBPaper00055507 | |||||
Remark | Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |