WormBase Tree Display for Variation: WBVar00054709

WBVar00054709 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00054709
    Other_name: cbs38039
    HGVSg: cb25.NA_094:g.12710G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.NA_094
    Flanking_sequences: ccacactgatcactgatgtgaatgtgggcattttttgaagaaacgccgta acatttactggcgggaggcgccgttatttctggaattggcgaagaattca
    Mapping_target: cb25.NA_094
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 905 95
        GTATAC BssNAI, Bst1107I, BstZ17I 1000
        TCGA EsaBC3I, TaqI, TthHB8I 382 337 185 96
        TCNGA Hpy188I 823 177
      Polymorphic_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 453 452 95
        GTATAC BssNAI, Bst1107I, BstZ17I 501 499
        TCGA EsaBC3I, TaqI, TthHB8I 337 266 185 116 96
        TCNGA Hpy188I 447 376 177
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00042281
    Transcript: CBG24087.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG24087.1:c.5C>A
        HGVSp: CBP42354.1:p.Ser2Tyr
        cDNA_position: 5
        CDS_position: 5
        Protein_position: 2
        Exon_number: 1/9
        Codon_change: tCt/tAt
        Amino_acid_change: S/Y
  Reference: WBPaper00030778
  Remark: Predicted by: Polybayes, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP