WormBase Tree Display for Variation: WBVar00092208

WBVar00092208 Name: Public_name: ok937
    Other_name: F45E4.3d.1:c.1887-84_2511-152del
      F45E4.3b.1:c.20727-84_21351-152del
      F45E4.3a.1:c.20727-84_21351-152del
      F45E4.3c.1:c.1887-84_2511-152del
    HGVSg: CHROMOSOME_IV:g.7615049_7616335del
  Sequence_details: SMap: S_parent: Sequence: F45E4
    Flanking_sequences: caaatcttactttgatagactgctttttga gatataatttctagcagtccaaagcaaaaa
    Mapping_target: F45E4
    Type_of_mutation: Deletion
    PCR_product: ok937_external
      ok937_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035934
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00018468
    Transcript: F45E4.3c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3c.1:c.1887-84_2511-152del
        Intron_number: 10-13/17
        Exon_number: 11-13/18
      F45E4.3d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3d.1:c.1887-84_2511-152del
        Intron_number: 10-13/24
        Exon_number: 11-13/25
      F45E4.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3b.1:c.20727-84_21351-152del
        Intron_number: 25-28/32
        Exon_number: 26-28/33
      F45E4.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F45E4.3a.1:c.20727-84_21351-152del
        Intron_number: 25-28/40
        Exon_number: 26-28/41
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000102 Paper_evidence: WBPaper00053377
        Curator_confirmed: WBPerson39938
        Phenotype_assay: Genotype: olaIs1 [tph-1p::mCherry; tph-1p::cat-1::gfp] Paper_evidence: WBPaper00053377
              Curator_confirmed: WBPerson39938
    Phenotype_not_observed: WBPhenotype:0000643 Paper_evidence: WBPaper00053377
        Curator_confirmed: WBPerson39938
  Reference: WBPaper00053377
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele