WormBase Tree Display for Variation: WBVar00092211

WBVar00092211 Name: Public_name: ok940
    Other_name: T09A12.4j.1:c.-2_755del
      T09A12.4d.1:c.416-24_1148del
      T09A12.4b.1:c.-2_749del
      T09A12.4a.1:c.176-24_902del
      T09A12.4f.1:c.638-24_1364del
      T09A12.4h.1:c.176-24_908del
      T09A12.4g.1:c.416-24_1142del
      T09A12.4c.1:c.638-24_1370del
    HGVSg: CHROMOSOME_IV:g.8228040_8229356del
  Sequence_details: SMap: S_parent: Sequence: T09A12
    Flanking_sequences: ttaaatttaaaaatgctattaaaacataca cagttaatattttgatctttatttgatttt
    Mapping_target: T09A12
    Type_of_mutation: Deletion
    PCR_product: ok940_external
      ok940_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031724
      WBStrain00034505
      WBStrain00034508
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00003656
    Transcript: T09A12.4i.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-722
        CDS_position: ?-722
        Protein_position: ?-241
        Intron_number: 1-4/7
        Exon_number: 1-5/8
      T09A12.4c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4c.1:c.638-24_1370del
        cDNA_position: ?-1375
        CDS_position: ?-1370
        Protein_position: ?-457
        Intron_number: 5-9/13
        Exon_number: 6-10/14
      T09A12.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4b.1:c.-2_749del
        cDNA_position: 2483-3233
        CDS_position: ?-749
        Protein_position: ?-250
        Intron_number: 2-5/9
        Exon_number: 1-6/10
      T09A12.4f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4f.1:c.638-24_1364del
        cDNA_position: ?-1389
        CDS_position: ?-1364
        Protein_position: ?-455
        Intron_number: 5-9/13
        Exon_number: 6-10/14
      T09A12.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4a.1:c.176-24_902del
        cDNA_position: ?-902
        CDS_position: ?-902
        Protein_position: ?-301
        Intron_number: 1-5/9
        Exon_number: 2-6/10
      T09A12.4d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4d.1:c.416-24_1148del
        cDNA_position: ?-1148
        CDS_position: ?-1148
        Protein_position: ?-383
        Intron_number: 3-7/10
        Exon_number: 4-8/11
      T09A12.4g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4g.1:c.416-24_1142del
        cDNA_position: ?-1142
        CDS_position: ?-1142
        Protein_position: ?-381
        Intron_number: 3-7/10
        Exon_number: 4-8/11
      T09A12.4j.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4j.1:c.-2_755del
        cDNA_position: 222-978
        CDS_position: ?-755
        Protein_position: ?-252
        Intron_number: 2-5/9
        Exon_number: 1-6/10
      T09A12.4e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-728
        CDS_position: ?-728
        Protein_position: ?-243
        Intron_number: 1-4/7
        Exon_number: 1-5/8
      T09A12.4h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4h.1:c.176-24_908del
        cDNA_position: ?-908
        CDS_position: ?-908
        Protein_position: ?-303
        Intron_number: 1-5/8
        Exon_number: 2-6/9
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000010 Paper_evidence: WBPaper00050371
        Curator_confirmed: WBPerson712
        Affected_by: Molecule: WBMol:00004938 Paper_evidence: WBPaper00050371
              Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: dazomet (2.5 mM) Paper_evidence: WBPaper00050371
              Curator_confirmed: WBPerson712
      WBPhenotype:0000016 Paper_evidence: WBPaper00050371
        Curator_confirmed: WBPerson712
        Affected_by: Molecule: WBMol:00003650 Paper_evidence: WBPaper00050371
              Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: aldicarb (0.25 mM) Paper_evidence: WBPaper00050371
              Curator_confirmed: WBPerson712
  Reference: WBPaper00050371
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele