WormBase Tree Display for Variation: WBVar00092407
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WBVar00092407 | Name | Public_name | ok1144 | ||
---|---|---|---|---|---|
Other_name | Y54G2A.2c.1:c.474+397_475-32delinsGGAAAAGGG | ||||
Y54G2A.2a.1:c.1311+397_1312-32delinsGGAAAAGGG | |||||
Y54G2A.2b.1:c.1311+397_1312-32delinsGGAAAAGGG | |||||
HGVSg | CHROMOSOME_IV:g.2795140_2795622delinsGGAAAAGGG | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | tttcgtcccgtaaatctacacagtaatccc | caaaaaattataatttgtcttcttctttca | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Insertion | GGAAAAGGG | |||
Deletion | |||||
PCR_product | OK1144_external | ||||
OK1144_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00031831 | ||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00021868 | |||
Transcript | Y54G2A.2c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.2c.1:c.474+397_475-32delinsGGAAAAGGG | ||||
Intron_number | 3/4 | ||||
Y54G2A.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.2a.1:c.1311+397_1312-32delinsGGAAAAGGG | ||||
Intron_number | 9/11 | ||||
Y54G2A.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.2b.1:c.1311+397_1312-32delinsGGAAAAGGG | ||||
Intron_number | 9/11 | ||||
Isolation | Mutagen | UV/TMP | |||
Reference | WBPaper00062224 | ||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |