WormBase Tree Display for Gene: WBGene00021868
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| WBGene00021868 | SMap | S_parent | Sequence | Y54G2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | atln-1 | Paper_evidence | WBPaper00042415 | |||||
| Sequence_name | Y54G2A.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | 4D561 | Accession_evidence | EMBL | AF303255 | |||||
| CELE_Y54G2A.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | atln-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jun 2013 14:47:04 | WBPerson2970 | Name_change | CGC_name | atln-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atln | ||||||||
| Allele (154) | |||||||||
| Strain | WBStrain00031831 | ||||||||
| WBStrain00047686 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00081747 | ||||||||
| 00081748 | |||||||||
| 00081749 | |||||||||
| 00081750 | |||||||||
| 00081751 | |||||||||
| 00105774 | |||||||||
| 00126073 | |||||||||
| 00126074 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00012763 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable GTP binding activity and GTPase activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D; hereditary sensory neuropathy type 1F; and hereditary spastic paraplegia 3A. Is an ortholog of human ATL3 (atlastin GTPase 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110791 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11231) | ||||
| DOID:0070154 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24526) | ||||||
| DOID:0070156 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11231) | ||||||
| Molecular_info | Corresponding_CDS | Y54G2A.2a | |||||||
| Y54G2A.2b | |||||||||
| Y54G2A.2c | |||||||||
| Y54G2A.2d | |||||||||
| Corresponding_CDS_history | Y54G2A.2:wp129 | ||||||||
| Corresponding_transcript | Y54G2A.2a.1 | ||||||||
| Y54G2A.2b.1 | |||||||||
| Y54G2A.2c.1 | |||||||||
| Y54G2A.2d.1 | |||||||||
| Other_sequence (71) | |||||||||
| Associated_feature | WBsf660004 | ||||||||
| WBsf660005 | |||||||||
| WBsf995777 | |||||||||
| WBsf228049 | |||||||||
| WBsf228050 | |||||||||
| WBsf228051 | |||||||||
| WBsf228052 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00112388 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00112387 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057450 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085582 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112386 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14263 | ||||||||
| Expr1026901 | |||||||||
| Expr1039602 | |||||||||
| Expr1160883 | |||||||||
| Expr2009506 | |||||||||
| Expr2027743 | |||||||||
| Construct_product | WBCnstr00017652 | ||||||||
| WBCnstr00040692 | |||||||||
| Antibody | WBAntibody00002439 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | IV | Position | -6.73979 | |||||
| Positive | Positive_clone | Y54G2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00042415 | |||||||||
| WBPaper00043241 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056132 | |||||||||
| WBPaper00060244 | |||||||||
| WBPaper00064947 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
