WormBase Tree Display for Variation: WBVar00092827

WBVar00092827 Name: Public_name: ok1619
    Other_name: K03A11.2.1:c.-55+593_-31del
    HGVSg: CHROMOSOME_X:g.13068214_13068986del
  Sequence_details: SMap: S_parent: Sequence: K03A11
    Flanking_sequences: tcttctatgcttgtccttgcgacgcttctc gtggacattgggaacaaagcttcagtatta
    Mapping_target: K03A11
    Type_of_mutation: Deletion
    PCR_product: OK1619_external
      OK1619_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032120
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00202486
      WBGene00010520
      WBGene00200314
    Transcript: K03A11.7 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      K03A11.2.2 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-26
        Exon_number: 1/5
      K03A11.9 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      K03A11.2.1 VEP_consequence: splice_acceptor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K03A11.2.1:c.-55+593_-31del
        cDNA_position: ?-383
        Intron_number: 2/6
        Exon_number: 3/7
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
    Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00010520 Genomic_neighbourhood
  Method: KO_consortium_allele