WormBase Tree Display for Variation: WBVar00092857

WBVar00092857 Evidence: Paper_evidence: WBPaper00035582
  Name: Public_name: ok1649
    Other_name: C29A12.4k.1:c.957+155_1144-86del
      C29A12.4b.1:c.957+155_1117-86del
      C29A12.4a.1:c.957+155_1117-86del
      C29A12.4l.1:c.957+155_1144-86del
    HGVSg: CHROMOSOME_V:g.10827571_10828431del
  Sequence_details: SMap: S_parent: Sequence: C29A12
    Flanking_sequences: tagtttttcgttttttttaatttttaaccc tatgtttcaattcaatcacaccccattttc
    Mapping_target: C29A12
    Type_of_mutation: Deletion
    PCR_product: ok1649_external
      ok1649_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036581
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00007799
    Transcript: C29A12.4l.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C29A12.4l.1:c.957+155_1144-86del
        Intron_number: 8-10/27
        Exon_number: 9-10/28
      C29A12.4k.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C29A12.4k.1:c.957+155_1144-86del
        Intron_number: 8-10/28
        Exon_number: 9-10/29
      C29A12.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C29A12.4a.1:c.957+155_1117-86del
        Intron_number: 9-10/28
        Exon_number: 10/29
      C29A12.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C29A12.4b.1:c.957+155_1117-86del
        Intron_number: 9-10/29
        Exon_number: 10/30
    Interactor: WBInteraction000051461
  Isolation: Mutagen: EMS
  Description: Phenotype_not_observed: WBPhenotype:0000249 Paper_evidence: WBPaper00035582
        Curator_confirmed: WBPerson2987
        Remark: No significant osmotic avoidance defect observed (P>0.001) Paper_evidence: WBPaper00035582
            Curator_confirmed: WBPerson2987
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00035582
                Curator_confirmed: WBPerson2987
        Phenotype_assay: Treatment: Adult animals assayed for osmotic avoidance to 4M fructose Paper_evidence: WBPaper00035582
              Curator_confirmed: WBPerson2987
          Temperature: 20C Paper_evidence: WBPaper00035582
              Curator_confirmed: WBPerson2987
          Genotype: nrx-1(ok1649) V Paper_evidence: WBPaper00035582
              Curator_confirmed: WBPerson2987
  Reference: WBPaper00035582
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele