WormBase Tree Display for Variation: WBVar00093071

WBVar00093071 Name: Public_name: ok1875
    Other_name: F13D12.7b.3:c.-150_*451del
      F13D12.7b.2:c.-150_*451del
      F13D12.7b.1:c.-150_*451del
      F13D12.7b.4:c.-150_*451del
      F13D12.7a.1:c.412_*451del
    HGVSg: CHROMOSOME_II:g.11743528_11745505del
  Sequence_details: SMap: S_parent: Sequence: F13D12
    Flanking_sequences: gtagaatacgatcggggagagaaagagagc acgagacacccgcacgtttccctcgcgtgt
    Mapping_target: F13D12
    Type_of_mutation: Deletion
    PCR_product: ok1875_external
      ok1875_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036648
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001679
    Transcript: F13D12.7b.5 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-978
        Intron_number: 2-4/5
        Exon_number: 1-6/6
      F13D12.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13D12.7a.1:c.412_*451del
        cDNA_position: 415-1477
        CDS_position: 412-?
        Protein_position: 138-?
        Intron_number: 6-9/10
        Exon_number: 6-11/11
      F13D12.7b.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,stop_retained_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13D12.7b.4:c.-150_*451del
        cDNA_position: 68-1130
        Intron_number: 1-5/6
        Exon_number: 1-7/7
      F13D12.7b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,stop_retained_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13D12.7b.1:c.-150_*451del
        cDNA_position: 669-1731
        Intron_number: 6-10/11
        Exon_number: 6-12/12
      F13D12.7b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,stop_retained_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13D12.7b.2:c.-150_*451del
        cDNA_position: 583-1645
        Intron_number: 5-9/10
        Exon_number: 5-11/11
      F13D12.7b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,stop_retained_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13D12.7b.3:c.-150_*451del
        cDNA_position: 356-1418
        Intron_number: 4-8/9
        Exon_number: 4-10/10
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele