WormBase Tree Display for Variation: WBVar00093959
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| WBVar00093959 | Name | Public_name | ok2864 | ||
|---|---|---|---|---|---|
| Other_name | CE47826:p.Leu249PhefsTer19 | ||||
| T05G5.8b.1:c.73_445delinsTTTCATTCGAAAAAGCTATTTGGAGTGTTTTTGATACTTTCTTGGATGTATTTATAAATA | |||||
| T05G5.8a.1:c.745_1117delinsTTTCATTCGAAAAAGCTATTTGGAGTGTTTTTGATACTTTCTTGGATGTATTTATAAATA | |||||
| CE47898:p.Leu25PhefsTer19 | |||||
| HGVSg | CHROMOSOME_III:g.9755758_9756130delinsTATTTATAAATACATCCAAGAAAGTATCAAAAACACTCCAAATAGCTTTTTCGAATGAAA | ||||
| Sequence_details | SMap | S_parent | Sequence | T05G5 | |
| Flanking_sequences | ccaggaactcatttaaagttttctcttgag | ttgctgttcgatgaaccattttacaaagtt | |||
| Mapping_target | T05G5 | ||||
| Type_of_mutation | Insertion | TATTTATAAATACATCCAAGAAAGTATCAAAAACACTCCAAATAGCTTTTTCGAATGAAA | |||
| Deletion | |||||
| PCR_product | OK2864_external | ||||
| OK2864_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037162 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00011502 | |||
| Transcript | T05G5.8b.1 | VEP_consequence | stop_gained,frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | T05G5.8b.1:c.73_445delinsTTTCATTCGAAAAAGCTATTTGGAGTGTTTTTGATACTTTCTTGGATGTATTTATAAATA | ||||
| HGVSp | CE47898:p.Leu25PhefsTer19 | ||||
| cDNA_position | 73-445 | ||||
| CDS_position | 73-445 | ||||
| Protein_position | 25-149 | ||||
| Exon_number | 1/4 | ||||
| Codon_change | CTCAGTGAATATGTTATCATTTATGCTGATAATGAAGAAGGCGCATGGTTGGATAAAGTTGATGATCGATACAAATGGTTCGTTCGTAAATTGACGGATTTCGAAAGAGCAGGACTTTCAAACATTTTCCCTGCTGACTGGCATATGGGAAGACGGTTGACCAGCGAGTTTTGTACAGTTACAAGGGATATTCTTTATCGAATAATGACAAGAAGGCGGCAGGATCTCGACTGGAAATTGTTGGGGCATGCAATTCAACATACAAAAATGTTTGAGGCACTTTTGACAAAGAGATTTCCTGAAAAAGATGGAATTTCATTCGAAAAAGCTATTTGGAGTGTTTTTGATACTTTCTTGGATGTATTTATAAATGct/TTTCATTCGAAAAAGCTATTTGGAGTGTTTTTGATACTTTCTTGGATGTATTTATAAATAct | ||||
| Amino_acid_change | LSEYVIIYADNEEGAWLDKVDDRYKWFVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTRRRQDLDWKLLGHAIQHTKMFEALLTKRFPEKDGISFEKAIWSVFDTFLDVFINA/FHSKKLFGVFLILSWMYL*IX | ||||
| T05G5.8a.1 | VEP_consequence | stop_gained,frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T05G5.8a.1:c.745_1117delinsTTTCATTCGAAAAAGCTATTTGGAGTGTTTTTGATACTTTCTTGGATGTATTTATAAATA | ||||
| HGVSp | CE47826:p.Leu249PhefsTer19 | ||||
| cDNA_position | 745-1117 | ||||
| CDS_position | 745-1117 | ||||
| Protein_position | 249-373 | ||||
| Exon_number | 3/7 | ||||
| Codon_change | CTCAGTGAATATGTTATCATTTATGCTGATAATGAAGAAGGCGCATGGTTGGATAAAGTTGATGATCGATACAAATGGTTCGTTCGTAAATTGACGGATTTCGAAAGAGCAGGACTTTCAAACATTTTCCCTGCTGACTGGCATATGGGAAGACGGTTGACCAGCGAGTTTTGTACAGTTACAAGGGATATTCTTTATCGAATAATGACAAGAAGGCGGCAGGATCTCGACTGGAAATTGTTGGGGCATGCAATTCAACATACAAAAATGTTTGAGGCACTTTTGACAAAGAGATTTCCTGAAAAAGATGGAATTTCATTCGAAAAAGCTATTTGGAGTGTTTTTGATACTTTCTTGGATGTATTTATAAATGct/TTTCATTCGAAAAAGCTATTTGGAGTGTTTTTGATACTTTCTTGGATGTATTTATAAATAct | ||||
| Amino_acid_change | LSEYVIIYADNEEGAWLDKVDDRYKWFVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTRRRQDLDWKLLGHAIQHTKMFEALLTKRFPEKDGISFEKAIWSVFDTFLDVFINA/FHSKKLFGVFLILSWMYL*IX | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
