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WormBase Tree Display for Variation: WBVar00109305

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Name Class

WBVar00109305EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00109305
Other_namecbs44826
HGVSgchrIV:g.12105827G>T
Sequence_detailsSMapS_parentSequencecb25.fpc0081
Flanking_sequencescattcacatggtacgcaagctcccaagaagcttcccgaagacacacgatgtatccagaggcacagagctggcaggatggtccagtgtatggtgctgggca
Mapping_targetcb25.fpc0081
Type_of_mutationSubstitutionGT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestTCGAEsaBC3I, TaqI, TthHB8I421 387 192
CACHindI61 57 56 53 47 47 45 40 37 34 34 33 32 28 26 26 25 24 24 23 22 21 21 20 18 18 18 17 13 12 10 9 8 7 7 6 5 4 3 3 2 2 2
Polymorphic_strain_digestTCGAEsaBC3I, TaqI, TthHB8I387 303 192 118
CACHindI61 57 56 53 47 47 45 40 37 34 34 33 32 28 26 26 25 24 24 23 22 21 21 20 20 18 18 17 13 12 10 9 8 7 7 6 5 4 3 3 2 2
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00027093
TranscriptCBG04423a.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScCBG04423a.1:c.5451C>A
HGVSpCBP45548.1:p.Tyr1817Ter
cDNA_position5451
CDS_position5451
Protein_position1817
Exon_number10/17
Codon_changetaC/taA
Amino_acid_changeY/*
CBG04423b.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScCBG04423b.1:c.5478C>A
HGVSpCBP43260.1:p.Tyr1826Ter
cDNA_position5478
CDS_position5478
Protein_position1826
Exon_number10/17
Codon_changetaC/taA
Amino_acid_changeY/*
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP