WormBase Tree Display for Variation: WBVar00109305
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WBVar00109305 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00109305 | ||||
Other_name | cbs44826 | |||||
HGVSg | chrIV:g.12105827G>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0081 | ||
Flanking_sequences | cattcacatggtacgcaagctcccaagaagcttcccgaagacacacgatg | tatccagaggcacagagctggcaggatggtccagtgtatggtgctgggca | ||||
Mapping_target | cb25.fpc0081 | |||||
Type_of_mutation | Substitution | G | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | TCGA | EsaBC3I, TaqI, TthHB8I | 421 387 192 | ||
CAC | HindI | 61 57 56 53 47 47 45 40 37 34 34 33 32 28 26 26 25 24 24 23 22 21 21 20 18 18 18 17 13 12 10 9 8 7 7 6 5 4 3 3 2 2 2 | ||||
Polymorphic_strain_digest | TCGA | EsaBC3I, TaqI, TthHB8I | 387 303 192 118 | |||
CAC | HindI | 61 57 56 53 47 47 45 40 37 34 34 33 32 28 26 26 25 24 24 23 22 21 21 20 20 18 18 17 13 12 10 9 8 7 7 6 5 4 3 3 2 2 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00027093 | ||||
Transcript | CBG04423a.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | |||||
HGVSc | CBG04423a.1:c.5451C>A | |||||
HGVSp | CBP45548.1:p.Tyr1817Ter | |||||
cDNA_position | 5451 | |||||
CDS_position | 5451 | |||||
Protein_position | 1817 | |||||
Exon_number | 10/17 | |||||
Codon_change | taC/taA | |||||
Amino_acid_change | Y/* | |||||
CBG04423b.1 | VEP_consequence | stop_gained | ||||
VEP_impact | HIGH | |||||
HGVSc | CBG04423b.1:c.5478C>A | |||||
HGVSp | CBP43260.1:p.Tyr1826Ter | |||||
cDNA_position | 5478 | |||||
CDS_position | 5478 | |||||
Protein_position | 1826 | |||||
Exon_number | 10/17 | |||||
Codon_change | taC/taA | |||||
Amino_acid_change | Y/* | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |