WormBase Tree Display for Variation: WBVar00113244
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WBVar00113244 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00113244 | ||||
Other_name | cbs48765 | |||||
cb48765 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrI:g.6128184G>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc1417 | ||
Flanking_sequences | gatggggtttagtaggcaagaatag | aagatgaacagatagagaaaagatt | ||||
Mapping_target | cb25.fpc1417 | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 799 201 | ||
CAC | HindI | 351 119 89 70 60 45 43 33 30 28 27 23 20 12 12 10 9 8 3 3 3 2 | ||||
Polymorphic_strain_digest | CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 1000 | |||
CAC | HindI | 351 108 89 70 60 45 43 33 30 28 27 23 20 20 12 11 10 9 3 3 3 2 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00030075 | ||||
Transcript | CBG08244a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG08244a.1:c.139-505C>T | |||||
Intron_number | 2/8 | |||||
CBG08244b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG08244b.1:c.139-505C>T | |||||
Intron_number | 1/7 | |||||
CBG08244c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG08244c.1:c.139-505C>T | |||||
Intron_number | 2/9 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |