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WormBase Tree Display for Variation: WBVar00113244

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Name Class

WBVar00113244EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00113244
Other_namecbs48765
cb48765Paper_evidenceWBPaper00055507
HGVSgchrI:g.6128184G>A
Sequence_detailsSMapS_parentSequencecb25.fpc1417
Flanking_sequencesgatggggtttagtaggcaagaatagaagatgaacagatagagaaaagatt
Mapping_targetcb25.fpc1417
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI799 201
CACHindI351 119 89 70 60 45 43 33 30 28 27 23 20 12 12 10 9 8 3 3 3 2
Polymorphic_strain_digestCCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI1000
CACHindI351 108 89 70 60 45 43 33 30 28 27 23 20 20 12 11 10 9 3 3 3 2
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00030075
TranscriptCBG08244a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG08244a.1:c.139-505C>T
Intron_number2/8
CBG08244b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG08244b.1:c.139-505C>T
Intron_number1/7
CBG08244c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG08244c.1:c.139-505C>T
Intron_number2/9
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP