WormBase Tree Display for Variation: WBVar00118457

WBVar00118457 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00118457
    Other_name: cbs53978
    HGVSg: chrI:g.8928032G>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2887d2
    Flanking_sequences: ggaaggctcgatgaacatggtaattgttttttttaatgatttgaaatagt gagggttccagtataagatttcccctttcgactcgttcagaatgaaaccg
    Mapping_target: cb25.fpc2887d2
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 1000
        TTTAAA AhaIII, DraI 398 361 161 80
        TGCA CviRI, HpyCH4V 861 139
        TCGA EsaBC3I, TaqI, TthHB8I 321 265 193 150 42 29
        CAC HindI 195 170 156 100 75 46 41 39 37 25 25 23 19 11 10 10 9 7 2
        TTAA MseI, Tru1I, Tru9I 242 185 161 119 87 79 69 35 23
        AATT Sse9I, TasI, Tsp509I, TspEI 263 171 135 119 89 88 55 47 19 8 6
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 516 484
        TTTAAA AhaIII, DraI 759 161 80
        TGCA CviRI, HpyCH4V 1000
        TCGA EsaBC3I, TaqI, TthHB8I 321 265 193 150 71
        CAC HindI 195 156 100 85 85 75 46 41 39 37 25 25 23 19 11 10 10 9 7 2
        TTAA MseI, Tru1I, Tru9I 242 185 161 118 88 79 69 35 23
        AATT Sse9I, TasI, Tsp509I, TspEI 263 171 135 89 88 73 55 47 46 19 8 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00033322
      WBGene00033324
    Transcript: CBG12363.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG12363.1:c.*682+32C>G
        Intron_number: 8/9
      CBG12365.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG12365.1:c.21+32C>G
        Intron_number: 1/10
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP